Cargando…

The E301R protein of African swine fever virus functions as a sliding clamp involved in viral genome replication

African swine fever virus (ASFV) is a complex nucleocytoplasmic, large DNA virus that infects both domestic pigs and wild boar, but little is known about the process of genomic replication. The E301R protein (pE301R) from ASFV was previously predicted as a proliferating cell nuclear antigen (PCNA)-l...

Descripción completa

Detalles Bibliográficos
Autores principales: Li, Su, Ge, Hailiang, Li, Yanhua, Zhang, Kehui, Yu, Shaoxiong, Cao, Hongwei, Wang, Yanjin, Deng, Hao, Li, Jiaqi, Dai, Jingwen, Li, Lian-Feng, Luo, Yuzi, Sun, Yuan, Geng, Zhi, Dong, Yuhui, Zhang, Heng, Qiu, Hua-Ji
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10653895/
https://www.ncbi.nlm.nih.gov/pubmed/37772878
http://dx.doi.org/10.1128/mbio.01645-23
_version_ 1785136512129564672
author Li, Su
Ge, Hailiang
Li, Yanhua
Zhang, Kehui
Yu, Shaoxiong
Cao, Hongwei
Wang, Yanjin
Deng, Hao
Li, Jiaqi
Dai, Jingwen
Li, Lian-Feng
Luo, Yuzi
Sun, Yuan
Geng, Zhi
Dong, Yuhui
Zhang, Heng
Qiu, Hua-Ji
author_facet Li, Su
Ge, Hailiang
Li, Yanhua
Zhang, Kehui
Yu, Shaoxiong
Cao, Hongwei
Wang, Yanjin
Deng, Hao
Li, Jiaqi
Dai, Jingwen
Li, Lian-Feng
Luo, Yuzi
Sun, Yuan
Geng, Zhi
Dong, Yuhui
Zhang, Heng
Qiu, Hua-Ji
author_sort Li, Su
collection PubMed
description African swine fever virus (ASFV) is a complex nucleocytoplasmic, large DNA virus that infects both domestic pigs and wild boar, but little is known about the process of genomic replication. The E301R protein (pE301R) from ASFV was previously predicted as a proliferating cell nuclear antigen (PCNA)-like protein through clamping DNA polymerase to the DNA duplex, but its exact structure and functions remain uncharacterized. Here, the crystal structure of pE301R revealed that it is composed of structurally similar head and tail domains and shares significant structural similarities to the DNA polymerase processivity factors, including sliding clamp and eukaryotic PCNA. More specifically, we demonstrated that pE301R exhibited multiple oligomeric states (with dimers and tetramers dominant), and the tetramers are consistent with the ring-shaped homotetramers in a head-to-tail manner generated by crystal packing. We also showed that pE301R interacted with the ASFV genome and viral DNA polymerase O174L. Furthermore, knockdown of E301R by specific small interfering RNAs (siRNAs) significantly decreased the virus genomic replication. Interestingly, the downregulation of PCNA by siRNAs significantly decreased the cell viability, whereas the inhibitory effect was reversed by pE301R overexpression. Notably, we demonstrated that overexpression of PCNA partially restored ASFV replication upon transfection of siRNAs targeting E301R. More importantly, T2 amino alcohol, a PCNA-specific inhibitor, markedly inhibited ASFV replication at the stage of viral genome replication. Taken together, we revealed that pE301R functions as a sliding clamp in ASFV genomic replication and can be used as a potential antiviral target. IMPORTANCE: Sliding clamp is a highly conserved protein in the evolution of prokaryotic and eukaryotic cells. The sliding clamp is required for genomic replication as a critical co-factor of DNA polymerases. However, the sliding clamp analogs in viruses remain largely unknown. We found that the ASFV E301R protein (pE301R) exhibited a sliding clamp-like structure and similar functions during ASFV replication. Interestingly, pE301R is assembled into a unique ring-shaped homotetramer distinct from sliding clamps or proliferating cell nuclear antigens (PCNAs) from other species. Notably, the E301R gene is required for viral life cycle, but the pE301R function can be partially restored by the porcine PCNA. This study not only highlights the functional role of the ASFV pE301R as a viral sliding clamp analog, but also facilitates the dissection of the complex replication mechanism of ASFV, which provides novel clues for developing antivirals against ASF.
format Online
Article
Text
id pubmed-10653895
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher American Society for Microbiology
record_format MEDLINE/PubMed
spelling pubmed-106538952023-09-29 The E301R protein of African swine fever virus functions as a sliding clamp involved in viral genome replication Li, Su Ge, Hailiang Li, Yanhua Zhang, Kehui Yu, Shaoxiong Cao, Hongwei Wang, Yanjin Deng, Hao Li, Jiaqi Dai, Jingwen Li, Lian-Feng Luo, Yuzi Sun, Yuan Geng, Zhi Dong, Yuhui Zhang, Heng Qiu, Hua-Ji mBio Research Article African swine fever virus (ASFV) is a complex nucleocytoplasmic, large DNA virus that infects both domestic pigs and wild boar, but little is known about the process of genomic replication. The E301R protein (pE301R) from ASFV was previously predicted as a proliferating cell nuclear antigen (PCNA)-like protein through clamping DNA polymerase to the DNA duplex, but its exact structure and functions remain uncharacterized. Here, the crystal structure of pE301R revealed that it is composed of structurally similar head and tail domains and shares significant structural similarities to the DNA polymerase processivity factors, including sliding clamp and eukaryotic PCNA. More specifically, we demonstrated that pE301R exhibited multiple oligomeric states (with dimers and tetramers dominant), and the tetramers are consistent with the ring-shaped homotetramers in a head-to-tail manner generated by crystal packing. We also showed that pE301R interacted with the ASFV genome and viral DNA polymerase O174L. Furthermore, knockdown of E301R by specific small interfering RNAs (siRNAs) significantly decreased the virus genomic replication. Interestingly, the downregulation of PCNA by siRNAs significantly decreased the cell viability, whereas the inhibitory effect was reversed by pE301R overexpression. Notably, we demonstrated that overexpression of PCNA partially restored ASFV replication upon transfection of siRNAs targeting E301R. More importantly, T2 amino alcohol, a PCNA-specific inhibitor, markedly inhibited ASFV replication at the stage of viral genome replication. Taken together, we revealed that pE301R functions as a sliding clamp in ASFV genomic replication and can be used as a potential antiviral target. IMPORTANCE: Sliding clamp is a highly conserved protein in the evolution of prokaryotic and eukaryotic cells. The sliding clamp is required for genomic replication as a critical co-factor of DNA polymerases. However, the sliding clamp analogs in viruses remain largely unknown. We found that the ASFV E301R protein (pE301R) exhibited a sliding clamp-like structure and similar functions during ASFV replication. Interestingly, pE301R is assembled into a unique ring-shaped homotetramer distinct from sliding clamps or proliferating cell nuclear antigens (PCNAs) from other species. Notably, the E301R gene is required for viral life cycle, but the pE301R function can be partially restored by the porcine PCNA. This study not only highlights the functional role of the ASFV pE301R as a viral sliding clamp analog, but also facilitates the dissection of the complex replication mechanism of ASFV, which provides novel clues for developing antivirals against ASF. American Society for Microbiology 2023-09-29 /pmc/articles/PMC10653895/ /pubmed/37772878 http://dx.doi.org/10.1128/mbio.01645-23 Text en Copyright © 2023 Li et al. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Research Article
Li, Su
Ge, Hailiang
Li, Yanhua
Zhang, Kehui
Yu, Shaoxiong
Cao, Hongwei
Wang, Yanjin
Deng, Hao
Li, Jiaqi
Dai, Jingwen
Li, Lian-Feng
Luo, Yuzi
Sun, Yuan
Geng, Zhi
Dong, Yuhui
Zhang, Heng
Qiu, Hua-Ji
The E301R protein of African swine fever virus functions as a sliding clamp involved in viral genome replication
title The E301R protein of African swine fever virus functions as a sliding clamp involved in viral genome replication
title_full The E301R protein of African swine fever virus functions as a sliding clamp involved in viral genome replication
title_fullStr The E301R protein of African swine fever virus functions as a sliding clamp involved in viral genome replication
title_full_unstemmed The E301R protein of African swine fever virus functions as a sliding clamp involved in viral genome replication
title_short The E301R protein of African swine fever virus functions as a sliding clamp involved in viral genome replication
title_sort e301r protein of african swine fever virus functions as a sliding clamp involved in viral genome replication
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10653895/
https://www.ncbi.nlm.nih.gov/pubmed/37772878
http://dx.doi.org/10.1128/mbio.01645-23
work_keys_str_mv AT lisu thee301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT gehailiang thee301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT liyanhua thee301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT zhangkehui thee301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT yushaoxiong thee301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT caohongwei thee301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT wangyanjin thee301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT denghao thee301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT lijiaqi thee301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT daijingwen thee301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT lilianfeng thee301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT luoyuzi thee301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT sunyuan thee301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT gengzhi thee301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT dongyuhui thee301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT zhangheng thee301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT qiuhuaji thee301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT lisu e301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT gehailiang e301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT liyanhua e301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT zhangkehui e301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT yushaoxiong e301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT caohongwei e301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT wangyanjin e301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT denghao e301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT lijiaqi e301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT daijingwen e301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT lilianfeng e301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT luoyuzi e301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT sunyuan e301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT gengzhi e301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT dongyuhui e301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT zhangheng e301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication
AT qiuhuaji e301rproteinofafricanswinefevervirusfunctionsasaslidingclampinvolvedinviralgenomereplication