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Classification of SLC family-related genes involved in ferroptosis predicts lung cancer prognosis and immunotherapy response

Lung adenocarcinoma, the most frequent type of lung cancer, is the leading cause of cancer-related deaths worldwide. Ferroptosis, controlled cell death that involves a high degree of iron-dependent lipid peroxidation, has been linked to tumor therapy sensitivity, patient prognosis, and cancer develo...

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Autores principales: Gao, Shun, Gong, Guotao, Wang, Xinyi, Gao, Xinrui, Guo, Xuanzhu, Luo, Yuyao, Li, Sijie, Zhang, Yan, Lin, Sheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10654497/
https://www.ncbi.nlm.nih.gov/pubmed/37973895
http://dx.doi.org/10.1038/s41598-023-47328-w
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author Gao, Shun
Gong, Guotao
Wang, Xinyi
Gao, Xinrui
Guo, Xuanzhu
Luo, Yuyao
Li, Sijie
Zhang, Yan
Lin, Sheng
author_facet Gao, Shun
Gong, Guotao
Wang, Xinyi
Gao, Xinrui
Guo, Xuanzhu
Luo, Yuyao
Li, Sijie
Zhang, Yan
Lin, Sheng
author_sort Gao, Shun
collection PubMed
description Lung adenocarcinoma, the most frequent type of lung cancer, is the leading cause of cancer-related deaths worldwide. Ferroptosis, controlled cell death that involves a high degree of iron-dependent lipid peroxidation, has been linked to tumor therapy sensitivity, patient prognosis, and cancer development. The solute carrier superfamily has over 400 members and comprises the largest class of transporters in the human genome. Solute carrier proteins can facilitate the movement of different substrates across biological membranes, which is crucial for physiological activities, including ferroptosis. Here, we developed a new model to further explore the role of the solute carrier family in ferroptosis in the lung adenocarcinoma immunological milieu. We used consensus clustering to classify patients with lung cancer into two subgroups (cluster1 and cluster2). Patients in the cluster1 subtype had a better prognosis and higher immune cell infiltration ratios than those in the cluster2 subtype. Furthermore, to evaluate the prognosis, the immune cell infiltration ratio, and the medication sensitivity of patients with lung adenocarcinoma, we developed gene scores related to the solute carrier family. In conclusion, we successfully developed a model incorporating the solute carrier family and ferroptosis to predict survival and the impact of immunotherapy on patients with lung cancer.
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spelling pubmed-106544972023-11-16 Classification of SLC family-related genes involved in ferroptosis predicts lung cancer prognosis and immunotherapy response Gao, Shun Gong, Guotao Wang, Xinyi Gao, Xinrui Guo, Xuanzhu Luo, Yuyao Li, Sijie Zhang, Yan Lin, Sheng Sci Rep Article Lung adenocarcinoma, the most frequent type of lung cancer, is the leading cause of cancer-related deaths worldwide. Ferroptosis, controlled cell death that involves a high degree of iron-dependent lipid peroxidation, has been linked to tumor therapy sensitivity, patient prognosis, and cancer development. The solute carrier superfamily has over 400 members and comprises the largest class of transporters in the human genome. Solute carrier proteins can facilitate the movement of different substrates across biological membranes, which is crucial for physiological activities, including ferroptosis. Here, we developed a new model to further explore the role of the solute carrier family in ferroptosis in the lung adenocarcinoma immunological milieu. We used consensus clustering to classify patients with lung cancer into two subgroups (cluster1 and cluster2). Patients in the cluster1 subtype had a better prognosis and higher immune cell infiltration ratios than those in the cluster2 subtype. Furthermore, to evaluate the prognosis, the immune cell infiltration ratio, and the medication sensitivity of patients with lung adenocarcinoma, we developed gene scores related to the solute carrier family. In conclusion, we successfully developed a model incorporating the solute carrier family and ferroptosis to predict survival and the impact of immunotherapy on patients with lung cancer. Nature Publishing Group UK 2023-11-16 /pmc/articles/PMC10654497/ /pubmed/37973895 http://dx.doi.org/10.1038/s41598-023-47328-w Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Gao, Shun
Gong, Guotao
Wang, Xinyi
Gao, Xinrui
Guo, Xuanzhu
Luo, Yuyao
Li, Sijie
Zhang, Yan
Lin, Sheng
Classification of SLC family-related genes involved in ferroptosis predicts lung cancer prognosis and immunotherapy response
title Classification of SLC family-related genes involved in ferroptosis predicts lung cancer prognosis and immunotherapy response
title_full Classification of SLC family-related genes involved in ferroptosis predicts lung cancer prognosis and immunotherapy response
title_fullStr Classification of SLC family-related genes involved in ferroptosis predicts lung cancer prognosis and immunotherapy response
title_full_unstemmed Classification of SLC family-related genes involved in ferroptosis predicts lung cancer prognosis and immunotherapy response
title_short Classification of SLC family-related genes involved in ferroptosis predicts lung cancer prognosis and immunotherapy response
title_sort classification of slc family-related genes involved in ferroptosis predicts lung cancer prognosis and immunotherapy response
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10654497/
https://www.ncbi.nlm.nih.gov/pubmed/37973895
http://dx.doi.org/10.1038/s41598-023-47328-w
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