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Deep learning workflow for the inverse design of molecules with specific optoelectronic properties
The inverse design of novel molecules with a desirable optoelectronic property requires consideration of the vast chemical spaces associated with varying chemical composition and molecular size. First principles-based property predictions have become increasingly helpful for assisting the selection...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10654498/ https://www.ncbi.nlm.nih.gov/pubmed/37973879 http://dx.doi.org/10.1038/s41598-023-45385-9 |
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author | Yoo, Pilsun Bhowmik, Debsindhu Mehta, Kshitij Zhang, Pei Liu, Frank Lupo Pasini, Massimiliano Irle, Stephan |
author_facet | Yoo, Pilsun Bhowmik, Debsindhu Mehta, Kshitij Zhang, Pei Liu, Frank Lupo Pasini, Massimiliano Irle, Stephan |
author_sort | Yoo, Pilsun |
collection | PubMed |
description | The inverse design of novel molecules with a desirable optoelectronic property requires consideration of the vast chemical spaces associated with varying chemical composition and molecular size. First principles-based property predictions have become increasingly helpful for assisting the selection of promising candidate chemical species for subsequent experimental validation. However, a brute-force computational screening of the entire chemical space is decidedly impossible. To alleviate the computational burden and accelerate rational molecular design, we here present an iterative deep learning workflow that combines (i) the density-functional tight-binding method for dynamic generation of property training data, (ii) a graph convolutional neural network surrogate model for rapid and reliable predictions of chemical and physical properties, and (iii) a masked language model. As proof of principle, we employ our workflow in the iterative generation of novel molecules with a target energy gap between the highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO). |
format | Online Article Text |
id | pubmed-10654498 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-106544982023-11-16 Deep learning workflow for the inverse design of molecules with specific optoelectronic properties Yoo, Pilsun Bhowmik, Debsindhu Mehta, Kshitij Zhang, Pei Liu, Frank Lupo Pasini, Massimiliano Irle, Stephan Sci Rep Article The inverse design of novel molecules with a desirable optoelectronic property requires consideration of the vast chemical spaces associated with varying chemical composition and molecular size. First principles-based property predictions have become increasingly helpful for assisting the selection of promising candidate chemical species for subsequent experimental validation. However, a brute-force computational screening of the entire chemical space is decidedly impossible. To alleviate the computational burden and accelerate rational molecular design, we here present an iterative deep learning workflow that combines (i) the density-functional tight-binding method for dynamic generation of property training data, (ii) a graph convolutional neural network surrogate model for rapid and reliable predictions of chemical and physical properties, and (iii) a masked language model. As proof of principle, we employ our workflow in the iterative generation of novel molecules with a target energy gap between the highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO). Nature Publishing Group UK 2023-11-16 /pmc/articles/PMC10654498/ /pubmed/37973879 http://dx.doi.org/10.1038/s41598-023-45385-9 Text en © UT-Battelle, LLC, 2023 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Yoo, Pilsun Bhowmik, Debsindhu Mehta, Kshitij Zhang, Pei Liu, Frank Lupo Pasini, Massimiliano Irle, Stephan Deep learning workflow for the inverse design of molecules with specific optoelectronic properties |
title | Deep learning workflow for the inverse design of molecules with specific optoelectronic properties |
title_full | Deep learning workflow for the inverse design of molecules with specific optoelectronic properties |
title_fullStr | Deep learning workflow for the inverse design of molecules with specific optoelectronic properties |
title_full_unstemmed | Deep learning workflow for the inverse design of molecules with specific optoelectronic properties |
title_short | Deep learning workflow for the inverse design of molecules with specific optoelectronic properties |
title_sort | deep learning workflow for the inverse design of molecules with specific optoelectronic properties |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10654498/ https://www.ncbi.nlm.nih.gov/pubmed/37973879 http://dx.doi.org/10.1038/s41598-023-45385-9 |
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