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ADMET property prediction via multi-task graph learning under adaptive auxiliary task selection

It is a critical step in lead optimization to evaluate the absorption, distribution, metabolism, excretion, and toxicity (ADMET) properties of drug-like compounds. Classical single-task learning (STL) has effectively predicted individual ADMET endpoints with abundant labels. Conversely, multi-task l...

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Detalles Bibliográficos
Autores principales: Du, Bing-Xue, Xu, Yi, Yiu, Siu-Ming, Yu, Hui, Shi, Jian-Yu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10654589/
https://www.ncbi.nlm.nih.gov/pubmed/38026198
http://dx.doi.org/10.1016/j.isci.2023.108285
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author Du, Bing-Xue
Xu, Yi
Yiu, Siu-Ming
Yu, Hui
Shi, Jian-Yu
author_facet Du, Bing-Xue
Xu, Yi
Yiu, Siu-Ming
Yu, Hui
Shi, Jian-Yu
author_sort Du, Bing-Xue
collection PubMed
description It is a critical step in lead optimization to evaluate the absorption, distribution, metabolism, excretion, and toxicity (ADMET) properties of drug-like compounds. Classical single-task learning (STL) has effectively predicted individual ADMET endpoints with abundant labels. Conversely, multi-task learning (MTL) can predict multiple ADMET endpoints with fewer labels, but ensuring task synergy and highlighting key molecular substructures remain challenges. To tackle these issues, this work elaborates a multi-task graph learning framework for predicting multiple ADMET properties of drug-like small molecules (MTGL-ADMET) by holding a new paradigm of MTL, “one primary, multiple auxiliaries.” It first adeptly combines status theory with maximum flow for auxiliary task selection. The subsequent phase introduces a primary-task-centric MTL model with integrated modules. MTGL-ADMET not only outstrips existing STL and MTL methods but also offers a transparent lens into crucial molecular substructures. It is anticipated that this work can promote lead compound finding and optimization in drug discovery.
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spelling pubmed-106545892023-10-24 ADMET property prediction via multi-task graph learning under adaptive auxiliary task selection Du, Bing-Xue Xu, Yi Yiu, Siu-Ming Yu, Hui Shi, Jian-Yu iScience Article It is a critical step in lead optimization to evaluate the absorption, distribution, metabolism, excretion, and toxicity (ADMET) properties of drug-like compounds. Classical single-task learning (STL) has effectively predicted individual ADMET endpoints with abundant labels. Conversely, multi-task learning (MTL) can predict multiple ADMET endpoints with fewer labels, but ensuring task synergy and highlighting key molecular substructures remain challenges. To tackle these issues, this work elaborates a multi-task graph learning framework for predicting multiple ADMET properties of drug-like small molecules (MTGL-ADMET) by holding a new paradigm of MTL, “one primary, multiple auxiliaries.” It first adeptly combines status theory with maximum flow for auxiliary task selection. The subsequent phase introduces a primary-task-centric MTL model with integrated modules. MTGL-ADMET not only outstrips existing STL and MTL methods but also offers a transparent lens into crucial molecular substructures. It is anticipated that this work can promote lead compound finding and optimization in drug discovery. Elsevier 2023-10-24 /pmc/articles/PMC10654589/ /pubmed/38026198 http://dx.doi.org/10.1016/j.isci.2023.108285 Text en © 2023 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Du, Bing-Xue
Xu, Yi
Yiu, Siu-Ming
Yu, Hui
Shi, Jian-Yu
ADMET property prediction via multi-task graph learning under adaptive auxiliary task selection
title ADMET property prediction via multi-task graph learning under adaptive auxiliary task selection
title_full ADMET property prediction via multi-task graph learning under adaptive auxiliary task selection
title_fullStr ADMET property prediction via multi-task graph learning under adaptive auxiliary task selection
title_full_unstemmed ADMET property prediction via multi-task graph learning under adaptive auxiliary task selection
title_short ADMET property prediction via multi-task graph learning under adaptive auxiliary task selection
title_sort admet property prediction via multi-task graph learning under adaptive auxiliary task selection
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10654589/
https://www.ncbi.nlm.nih.gov/pubmed/38026198
http://dx.doi.org/10.1016/j.isci.2023.108285
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