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ADMET property prediction via multi-task graph learning under adaptive auxiliary task selection
It is a critical step in lead optimization to evaluate the absorption, distribution, metabolism, excretion, and toxicity (ADMET) properties of drug-like compounds. Classical single-task learning (STL) has effectively predicted individual ADMET endpoints with abundant labels. Conversely, multi-task l...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10654589/ https://www.ncbi.nlm.nih.gov/pubmed/38026198 http://dx.doi.org/10.1016/j.isci.2023.108285 |
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author | Du, Bing-Xue Xu, Yi Yiu, Siu-Ming Yu, Hui Shi, Jian-Yu |
author_facet | Du, Bing-Xue Xu, Yi Yiu, Siu-Ming Yu, Hui Shi, Jian-Yu |
author_sort | Du, Bing-Xue |
collection | PubMed |
description | It is a critical step in lead optimization to evaluate the absorption, distribution, metabolism, excretion, and toxicity (ADMET) properties of drug-like compounds. Classical single-task learning (STL) has effectively predicted individual ADMET endpoints with abundant labels. Conversely, multi-task learning (MTL) can predict multiple ADMET endpoints with fewer labels, but ensuring task synergy and highlighting key molecular substructures remain challenges. To tackle these issues, this work elaborates a multi-task graph learning framework for predicting multiple ADMET properties of drug-like small molecules (MTGL-ADMET) by holding a new paradigm of MTL, “one primary, multiple auxiliaries.” It first adeptly combines status theory with maximum flow for auxiliary task selection. The subsequent phase introduces a primary-task-centric MTL model with integrated modules. MTGL-ADMET not only outstrips existing STL and MTL methods but also offers a transparent lens into crucial molecular substructures. It is anticipated that this work can promote lead compound finding and optimization in drug discovery. |
format | Online Article Text |
id | pubmed-10654589 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-106545892023-10-24 ADMET property prediction via multi-task graph learning under adaptive auxiliary task selection Du, Bing-Xue Xu, Yi Yiu, Siu-Ming Yu, Hui Shi, Jian-Yu iScience Article It is a critical step in lead optimization to evaluate the absorption, distribution, metabolism, excretion, and toxicity (ADMET) properties of drug-like compounds. Classical single-task learning (STL) has effectively predicted individual ADMET endpoints with abundant labels. Conversely, multi-task learning (MTL) can predict multiple ADMET endpoints with fewer labels, but ensuring task synergy and highlighting key molecular substructures remain challenges. To tackle these issues, this work elaborates a multi-task graph learning framework for predicting multiple ADMET properties of drug-like small molecules (MTGL-ADMET) by holding a new paradigm of MTL, “one primary, multiple auxiliaries.” It first adeptly combines status theory with maximum flow for auxiliary task selection. The subsequent phase introduces a primary-task-centric MTL model with integrated modules. MTGL-ADMET not only outstrips existing STL and MTL methods but also offers a transparent lens into crucial molecular substructures. It is anticipated that this work can promote lead compound finding and optimization in drug discovery. Elsevier 2023-10-24 /pmc/articles/PMC10654589/ /pubmed/38026198 http://dx.doi.org/10.1016/j.isci.2023.108285 Text en © 2023 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Article Du, Bing-Xue Xu, Yi Yiu, Siu-Ming Yu, Hui Shi, Jian-Yu ADMET property prediction via multi-task graph learning under adaptive auxiliary task selection |
title | ADMET property prediction via multi-task graph learning under adaptive auxiliary task selection |
title_full | ADMET property prediction via multi-task graph learning under adaptive auxiliary task selection |
title_fullStr | ADMET property prediction via multi-task graph learning under adaptive auxiliary task selection |
title_full_unstemmed | ADMET property prediction via multi-task graph learning under adaptive auxiliary task selection |
title_short | ADMET property prediction via multi-task graph learning under adaptive auxiliary task selection |
title_sort | admet property prediction via multi-task graph learning under adaptive auxiliary task selection |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10654589/ https://www.ncbi.nlm.nih.gov/pubmed/38026198 http://dx.doi.org/10.1016/j.isci.2023.108285 |
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