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Development of a recombinase-aided amplification combined with a lateral flow dipstick assay for rapid detection of H7 subtype avian influenza virus
Avian influenza viruses (AIV) pose a significant persistent threat to the public health and safety. It is estimated that there have been over 100 outbreaks caused by various H7 subtypes of avian influenza viruses (AIV-H7) worldwide, resulting in over 33 million deaths of poultry. In this study, we d...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10654746/ https://www.ncbi.nlm.nih.gov/pubmed/38029110 http://dx.doi.org/10.3389/fmicb.2023.1286713 |
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author | Zhang, Fuyou Shang, Jiajing Luo, Juan Yin, Xin Yu, Xiaohui Jiang, Wenming Li, Jinping Yuan, Liping Hou, Guangyu Liu, Hualei Li, Yang |
author_facet | Zhang, Fuyou Shang, Jiajing Luo, Juan Yin, Xin Yu, Xiaohui Jiang, Wenming Li, Jinping Yuan, Liping Hou, Guangyu Liu, Hualei Li, Yang |
author_sort | Zhang, Fuyou |
collection | PubMed |
description | Avian influenza viruses (AIV) pose a significant persistent threat to the public health and safety. It is estimated that there have been over 100 outbreaks caused by various H7 subtypes of avian influenza viruses (AIV-H7) worldwide, resulting in over 33 million deaths of poultry. In this study, we developed a recombinase-aided amplification combined with a lateral flow dipstick assay for the detection of hemagglutinin (HA) genes to provide technical support for rapid clinical detection of AIV-H7. The results showed that the assay can complete the reaction within 30 min at a temperature of 39°C. Specificity tests demonstrated that there was no cross-reactivity with other common poultry pathogens, including Newcastle disease virus (NDV) and infections bronchitis virus (IBV). The detection limit of this assay was 1 × 10(1) copies/μL, while RT-qPCR method was 1 × 10(1) copies/μL, and RT-PCR was 1 × 10(2) copies/μL. The κ value of the RT-RAA-LFD and RT-PCR assay in 132 avian clinical samples was 0.9169 (p < 0.001). These results indicated that the developed RT-RAA-LFD assay had good specificity, sensitivity, stability and repeatability and may be used for rapid detection of AIV-H7 in clinical diagnosis. |
format | Online Article Text |
id | pubmed-10654746 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-106547462023-11-03 Development of a recombinase-aided amplification combined with a lateral flow dipstick assay for rapid detection of H7 subtype avian influenza virus Zhang, Fuyou Shang, Jiajing Luo, Juan Yin, Xin Yu, Xiaohui Jiang, Wenming Li, Jinping Yuan, Liping Hou, Guangyu Liu, Hualei Li, Yang Front Microbiol Microbiology Avian influenza viruses (AIV) pose a significant persistent threat to the public health and safety. It is estimated that there have been over 100 outbreaks caused by various H7 subtypes of avian influenza viruses (AIV-H7) worldwide, resulting in over 33 million deaths of poultry. In this study, we developed a recombinase-aided amplification combined with a lateral flow dipstick assay for the detection of hemagglutinin (HA) genes to provide technical support for rapid clinical detection of AIV-H7. The results showed that the assay can complete the reaction within 30 min at a temperature of 39°C. Specificity tests demonstrated that there was no cross-reactivity with other common poultry pathogens, including Newcastle disease virus (NDV) and infections bronchitis virus (IBV). The detection limit of this assay was 1 × 10(1) copies/μL, while RT-qPCR method was 1 × 10(1) copies/μL, and RT-PCR was 1 × 10(2) copies/μL. The κ value of the RT-RAA-LFD and RT-PCR assay in 132 avian clinical samples was 0.9169 (p < 0.001). These results indicated that the developed RT-RAA-LFD assay had good specificity, sensitivity, stability and repeatability and may be used for rapid detection of AIV-H7 in clinical diagnosis. Frontiers Media S.A. 2023-11-03 /pmc/articles/PMC10654746/ /pubmed/38029110 http://dx.doi.org/10.3389/fmicb.2023.1286713 Text en Copyright © 2023 Zhang, Shang, Luo, Yin, Yu, Jiang, Li, Yuan, Hou, Liu and Li. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Zhang, Fuyou Shang, Jiajing Luo, Juan Yin, Xin Yu, Xiaohui Jiang, Wenming Li, Jinping Yuan, Liping Hou, Guangyu Liu, Hualei Li, Yang Development of a recombinase-aided amplification combined with a lateral flow dipstick assay for rapid detection of H7 subtype avian influenza virus |
title | Development of a recombinase-aided amplification combined with a lateral flow dipstick assay for rapid detection of H7 subtype avian influenza virus |
title_full | Development of a recombinase-aided amplification combined with a lateral flow dipstick assay for rapid detection of H7 subtype avian influenza virus |
title_fullStr | Development of a recombinase-aided amplification combined with a lateral flow dipstick assay for rapid detection of H7 subtype avian influenza virus |
title_full_unstemmed | Development of a recombinase-aided amplification combined with a lateral flow dipstick assay for rapid detection of H7 subtype avian influenza virus |
title_short | Development of a recombinase-aided amplification combined with a lateral flow dipstick assay for rapid detection of H7 subtype avian influenza virus |
title_sort | development of a recombinase-aided amplification combined with a lateral flow dipstick assay for rapid detection of h7 subtype avian influenza virus |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10654746/ https://www.ncbi.nlm.nih.gov/pubmed/38029110 http://dx.doi.org/10.3389/fmicb.2023.1286713 |
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