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Nematode Genome Announcement: A Draft Genome of Seed Gall Nematode, Anguina tritici
Anguina tritici is the first plant-parasitic nematode described in literature, dating back to the year 1743. It is responsible for causing earcockle (seed gall) and tundu diseases in wheat and rye. Notably, this nematode has been observed to survive in an anhydrobiotic state for up to 32 years withi...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Sciendo
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10656185/ https://www.ncbi.nlm.nih.gov/pubmed/38026554 http://dx.doi.org/10.2478/jofnem-2023-0031 |
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author | Singh, Ashish Kumar Das, Antara Joshi, Ila Kumar, Manish Kohli, Deshika Pankaj Gaikwad, Kishor Jain, Pradeep Kumar Sirohi, Anil |
author_facet | Singh, Ashish Kumar Das, Antara Joshi, Ila Kumar, Manish Kohli, Deshika Pankaj Gaikwad, Kishor Jain, Pradeep Kumar Sirohi, Anil |
author_sort | Singh, Ashish Kumar |
collection | PubMed |
description | Anguina tritici is the first plant-parasitic nematode described in literature, dating back to the year 1743. It is responsible for causing earcockle (seed gall) and tundu diseases in wheat and rye. Notably, this nematode has been observed to survive in an anhydrobiotic state for up to 32 years within wheat seed galls. These exceptional characteristics have inspired the sequencing of the A. tritici genome. In this study, we present the initial draft genome of A. tritici, obtained using the Illumina MiSeq platform with coverage of 60-fold. The genome is estimated to have a size of 164 Mb and comprises 39,965 protein-coding genes, exhibiting a GC content of 39.1%. The availability of this genome data will serve as a foundation for future functional biological investigations, particularly for genes whose functions remain unknown to this day. |
format | Online Article Text |
id | pubmed-10656185 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Sciendo |
record_format | MEDLINE/PubMed |
spelling | pubmed-106561852023-11-15 Nematode Genome Announcement: A Draft Genome of Seed Gall Nematode, Anguina tritici Singh, Ashish Kumar Das, Antara Joshi, Ila Kumar, Manish Kohli, Deshika Pankaj Gaikwad, Kishor Jain, Pradeep Kumar Sirohi, Anil J Nematol Research Paper Anguina tritici is the first plant-parasitic nematode described in literature, dating back to the year 1743. It is responsible for causing earcockle (seed gall) and tundu diseases in wheat and rye. Notably, this nematode has been observed to survive in an anhydrobiotic state for up to 32 years within wheat seed galls. These exceptional characteristics have inspired the sequencing of the A. tritici genome. In this study, we present the initial draft genome of A. tritici, obtained using the Illumina MiSeq platform with coverage of 60-fold. The genome is estimated to have a size of 164 Mb and comprises 39,965 protein-coding genes, exhibiting a GC content of 39.1%. The availability of this genome data will serve as a foundation for future functional biological investigations, particularly for genes whose functions remain unknown to this day. Sciendo 2023-11-15 /pmc/articles/PMC10656185/ /pubmed/38026554 http://dx.doi.org/10.2478/jofnem-2023-0031 Text en © 2023 Ashish Kumar Singh et al., published by Sciendo https://creativecommons.org/licenses/by/4.0/This work is licensed under the Creative Commons Attribution 4.0 International License. |
spellingShingle | Research Paper Singh, Ashish Kumar Das, Antara Joshi, Ila Kumar, Manish Kohli, Deshika Pankaj Gaikwad, Kishor Jain, Pradeep Kumar Sirohi, Anil Nematode Genome Announcement: A Draft Genome of Seed Gall Nematode, Anguina tritici |
title | Nematode Genome Announcement: A Draft Genome of Seed Gall Nematode, Anguina tritici |
title_full | Nematode Genome Announcement: A Draft Genome of Seed Gall Nematode, Anguina tritici |
title_fullStr | Nematode Genome Announcement: A Draft Genome of Seed Gall Nematode, Anguina tritici |
title_full_unstemmed | Nematode Genome Announcement: A Draft Genome of Seed Gall Nematode, Anguina tritici |
title_short | Nematode Genome Announcement: A Draft Genome of Seed Gall Nematode, Anguina tritici |
title_sort | nematode genome announcement: a draft genome of seed gall nematode, anguina tritici |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10656185/ https://www.ncbi.nlm.nih.gov/pubmed/38026554 http://dx.doi.org/10.2478/jofnem-2023-0031 |
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