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Nematode Genome Announcement: A Draft Genome of Seed Gall Nematode, Anguina tritici

Anguina tritici is the first plant-parasitic nematode described in literature, dating back to the year 1743. It is responsible for causing earcockle (seed gall) and tundu diseases in wheat and rye. Notably, this nematode has been observed to survive in an anhydrobiotic state for up to 32 years withi...

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Autores principales: Singh, Ashish Kumar, Das, Antara, Joshi, Ila, Kumar, Manish, Kohli, Deshika, Pankaj, Gaikwad, Kishor, Jain, Pradeep Kumar, Sirohi, Anil
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Sciendo 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10656185/
https://www.ncbi.nlm.nih.gov/pubmed/38026554
http://dx.doi.org/10.2478/jofnem-2023-0031
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author Singh, Ashish Kumar
Das, Antara
Joshi, Ila
Kumar, Manish
Kohli, Deshika
Pankaj
Gaikwad, Kishor
Jain, Pradeep Kumar
Sirohi, Anil
author_facet Singh, Ashish Kumar
Das, Antara
Joshi, Ila
Kumar, Manish
Kohli, Deshika
Pankaj
Gaikwad, Kishor
Jain, Pradeep Kumar
Sirohi, Anil
author_sort Singh, Ashish Kumar
collection PubMed
description Anguina tritici is the first plant-parasitic nematode described in literature, dating back to the year 1743. It is responsible for causing earcockle (seed gall) and tundu diseases in wheat and rye. Notably, this nematode has been observed to survive in an anhydrobiotic state for up to 32 years within wheat seed galls. These exceptional characteristics have inspired the sequencing of the A. tritici genome. In this study, we present the initial draft genome of A. tritici, obtained using the Illumina MiSeq platform with coverage of 60-fold. The genome is estimated to have a size of 164 Mb and comprises 39,965 protein-coding genes, exhibiting a GC content of 39.1%. The availability of this genome data will serve as a foundation for future functional biological investigations, particularly for genes whose functions remain unknown to this day.
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spelling pubmed-106561852023-11-15 Nematode Genome Announcement: A Draft Genome of Seed Gall Nematode, Anguina tritici Singh, Ashish Kumar Das, Antara Joshi, Ila Kumar, Manish Kohli, Deshika Pankaj Gaikwad, Kishor Jain, Pradeep Kumar Sirohi, Anil J Nematol Research Paper Anguina tritici is the first plant-parasitic nematode described in literature, dating back to the year 1743. It is responsible for causing earcockle (seed gall) and tundu diseases in wheat and rye. Notably, this nematode has been observed to survive in an anhydrobiotic state for up to 32 years within wheat seed galls. These exceptional characteristics have inspired the sequencing of the A. tritici genome. In this study, we present the initial draft genome of A. tritici, obtained using the Illumina MiSeq platform with coverage of 60-fold. The genome is estimated to have a size of 164 Mb and comprises 39,965 protein-coding genes, exhibiting a GC content of 39.1%. The availability of this genome data will serve as a foundation for future functional biological investigations, particularly for genes whose functions remain unknown to this day. Sciendo 2023-11-15 /pmc/articles/PMC10656185/ /pubmed/38026554 http://dx.doi.org/10.2478/jofnem-2023-0031 Text en © 2023 Ashish Kumar Singh et al., published by Sciendo https://creativecommons.org/licenses/by/4.0/This work is licensed under the Creative Commons Attribution 4.0 International License.
spellingShingle Research Paper
Singh, Ashish Kumar
Das, Antara
Joshi, Ila
Kumar, Manish
Kohli, Deshika
Pankaj
Gaikwad, Kishor
Jain, Pradeep Kumar
Sirohi, Anil
Nematode Genome Announcement: A Draft Genome of Seed Gall Nematode, Anguina tritici
title Nematode Genome Announcement: A Draft Genome of Seed Gall Nematode, Anguina tritici
title_full Nematode Genome Announcement: A Draft Genome of Seed Gall Nematode, Anguina tritici
title_fullStr Nematode Genome Announcement: A Draft Genome of Seed Gall Nematode, Anguina tritici
title_full_unstemmed Nematode Genome Announcement: A Draft Genome of Seed Gall Nematode, Anguina tritici
title_short Nematode Genome Announcement: A Draft Genome of Seed Gall Nematode, Anguina tritici
title_sort nematode genome announcement: a draft genome of seed gall nematode, anguina tritici
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10656185/
https://www.ncbi.nlm.nih.gov/pubmed/38026554
http://dx.doi.org/10.2478/jofnem-2023-0031
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