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A novel subject-wise dictionary learning approach using multi-subject fMRI spatial and temporal components
The conventional dictionary learning (DL) algorithms aim to adapt the dictionary/sparse code to individual functional magnetic resonance imaging (fMRI) data. Thus, lacking the capability to consolidate the spatiotemporal diversities offered by other subjects. Considering that subject-wise (sw) data...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10657419/ https://www.ncbi.nlm.nih.gov/pubmed/37980391 http://dx.doi.org/10.1038/s41598-023-47420-1 |
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author | Khalid, Muhammad Usman Nauman, Malik Muhammad |
author_facet | Khalid, Muhammad Usman Nauman, Malik Muhammad |
author_sort | Khalid, Muhammad Usman |
collection | PubMed |
description | The conventional dictionary learning (DL) algorithms aim to adapt the dictionary/sparse code to individual functional magnetic resonance imaging (fMRI) data. Thus, lacking the capability to consolidate the spatiotemporal diversities offered by other subjects. Considering that subject-wise (sw) data matrix can be decomposed into the sparse linear combination of multi-subject (MS) time courses and MS spatial maps, two new algorithms, sw sequential DL (swsDL) and sw block DL (swbDL), have been proposed. They are based on the novel framework, defined by the mixing model, where base matrices prepared by operating a computationally fast sparse spatiotemporal blind source separation method over multiple subjects are employed to adapt the mixing matrices to sw training data. They solve the optimization models formulated using [Formula: see text] /[Formula: see text] -norm penalization/constraints through dictionary/sparse code pair update and alternating minimization approach. They are unique because no existing sparse DL method can incorporate MS spatiotemporal components while updating sw atoms/sparse codes, which can eventually be assembled using neuroscience knowledge to extract group-level dynamics. Various fMRI datasets are used to evaluate and compare the performance of the proposed algorithms with existing state-of-the-art algorithms. Specifically, overall, a [Formula: see text] increase in the mean correlation value and [Formula: see text] reduction in the mean computation time exhibited by swsDL and swbDL, respectively, over the adaptive consistent sequential dictionary algorithm. |
format | Online Article Text |
id | pubmed-10657419 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-106574192023-11-18 A novel subject-wise dictionary learning approach using multi-subject fMRI spatial and temporal components Khalid, Muhammad Usman Nauman, Malik Muhammad Sci Rep Article The conventional dictionary learning (DL) algorithms aim to adapt the dictionary/sparse code to individual functional magnetic resonance imaging (fMRI) data. Thus, lacking the capability to consolidate the spatiotemporal diversities offered by other subjects. Considering that subject-wise (sw) data matrix can be decomposed into the sparse linear combination of multi-subject (MS) time courses and MS spatial maps, two new algorithms, sw sequential DL (swsDL) and sw block DL (swbDL), have been proposed. They are based on the novel framework, defined by the mixing model, where base matrices prepared by operating a computationally fast sparse spatiotemporal blind source separation method over multiple subjects are employed to adapt the mixing matrices to sw training data. They solve the optimization models formulated using [Formula: see text] /[Formula: see text] -norm penalization/constraints through dictionary/sparse code pair update and alternating minimization approach. They are unique because no existing sparse DL method can incorporate MS spatiotemporal components while updating sw atoms/sparse codes, which can eventually be assembled using neuroscience knowledge to extract group-level dynamics. Various fMRI datasets are used to evaluate and compare the performance of the proposed algorithms with existing state-of-the-art algorithms. Specifically, overall, a [Formula: see text] increase in the mean correlation value and [Formula: see text] reduction in the mean computation time exhibited by swsDL and swbDL, respectively, over the adaptive consistent sequential dictionary algorithm. Nature Publishing Group UK 2023-11-18 /pmc/articles/PMC10657419/ /pubmed/37980391 http://dx.doi.org/10.1038/s41598-023-47420-1 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Khalid, Muhammad Usman Nauman, Malik Muhammad A novel subject-wise dictionary learning approach using multi-subject fMRI spatial and temporal components |
title | A novel subject-wise dictionary learning approach using multi-subject fMRI spatial and temporal components |
title_full | A novel subject-wise dictionary learning approach using multi-subject fMRI spatial and temporal components |
title_fullStr | A novel subject-wise dictionary learning approach using multi-subject fMRI spatial and temporal components |
title_full_unstemmed | A novel subject-wise dictionary learning approach using multi-subject fMRI spatial and temporal components |
title_short | A novel subject-wise dictionary learning approach using multi-subject fMRI spatial and temporal components |
title_sort | novel subject-wise dictionary learning approach using multi-subject fmri spatial and temporal components |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10657419/ https://www.ncbi.nlm.nih.gov/pubmed/37980391 http://dx.doi.org/10.1038/s41598-023-47420-1 |
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