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Evolutionary “Crowdsourcing”: Alignment of Fitness Landscapes Allows for Cross-species Adaptation of a Horizontally Transferred Gene

Genes that undergo horizontal gene transfer (HGT) evolve in different genomic backgrounds. Despite the ubiquity of cross-species HGT, the effects of switching hosts on gene evolution remains understudied. Here, we present a framework to examine the evolutionary consequences of host-switching and app...

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Autores principales: Kosterlitz, Olivia, Grassi, Nathan, Werner, Bailey, McGee, Ryan Seamus, Top, Eva M, Kerr, Benjamin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10657783/
https://www.ncbi.nlm.nih.gov/pubmed/37931146
http://dx.doi.org/10.1093/molbev/msad237
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author Kosterlitz, Olivia
Grassi, Nathan
Werner, Bailey
McGee, Ryan Seamus
Top, Eva M
Kerr, Benjamin
author_facet Kosterlitz, Olivia
Grassi, Nathan
Werner, Bailey
McGee, Ryan Seamus
Top, Eva M
Kerr, Benjamin
author_sort Kosterlitz, Olivia
collection PubMed
description Genes that undergo horizontal gene transfer (HGT) evolve in different genomic backgrounds. Despite the ubiquity of cross-species HGT, the effects of switching hosts on gene evolution remains understudied. Here, we present a framework to examine the evolutionary consequences of host-switching and apply this framework to an antibiotic resistance gene commonly found on conjugative plasmids. Specifically, we determined the adaptive landscape of this gene for a small set of mutationally connected genotypes in 3 enteric species. We uncovered that the landscape topographies were largely aligned with minimal host-dependent mutational effects. By simulating gene evolution over the experimentally gauged landscapes, we found that the adaptive evolution of the mobile gene in one species translated to adaptation in another. By simulating gene evolution over artificial landscapes, we found that sufficient alignment between landscapes ensures such “adaptive equivalency” across species. Thus, given adequate landscape alignment within a bacterial community, vehicles of HGT such as plasmids may enable a distributed form of genetic evolution across community members, where species can “crowdsource” adaptation.
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spelling pubmed-106577832023-11-01 Evolutionary “Crowdsourcing”: Alignment of Fitness Landscapes Allows for Cross-species Adaptation of a Horizontally Transferred Gene Kosterlitz, Olivia Grassi, Nathan Werner, Bailey McGee, Ryan Seamus Top, Eva M Kerr, Benjamin Mol Biol Evol Discoveries Genes that undergo horizontal gene transfer (HGT) evolve in different genomic backgrounds. Despite the ubiquity of cross-species HGT, the effects of switching hosts on gene evolution remains understudied. Here, we present a framework to examine the evolutionary consequences of host-switching and apply this framework to an antibiotic resistance gene commonly found on conjugative plasmids. Specifically, we determined the adaptive landscape of this gene for a small set of mutationally connected genotypes in 3 enteric species. We uncovered that the landscape topographies were largely aligned with minimal host-dependent mutational effects. By simulating gene evolution over the experimentally gauged landscapes, we found that the adaptive evolution of the mobile gene in one species translated to adaptation in another. By simulating gene evolution over artificial landscapes, we found that sufficient alignment between landscapes ensures such “adaptive equivalency” across species. Thus, given adequate landscape alignment within a bacterial community, vehicles of HGT such as plasmids may enable a distributed form of genetic evolution across community members, where species can “crowdsource” adaptation. Oxford University Press 2023-11-01 /pmc/articles/PMC10657783/ /pubmed/37931146 http://dx.doi.org/10.1093/molbev/msad237 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Society for Molecular Biology and Evolution. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Discoveries
Kosterlitz, Olivia
Grassi, Nathan
Werner, Bailey
McGee, Ryan Seamus
Top, Eva M
Kerr, Benjamin
Evolutionary “Crowdsourcing”: Alignment of Fitness Landscapes Allows for Cross-species Adaptation of a Horizontally Transferred Gene
title Evolutionary “Crowdsourcing”: Alignment of Fitness Landscapes Allows for Cross-species Adaptation of a Horizontally Transferred Gene
title_full Evolutionary “Crowdsourcing”: Alignment of Fitness Landscapes Allows for Cross-species Adaptation of a Horizontally Transferred Gene
title_fullStr Evolutionary “Crowdsourcing”: Alignment of Fitness Landscapes Allows for Cross-species Adaptation of a Horizontally Transferred Gene
title_full_unstemmed Evolutionary “Crowdsourcing”: Alignment of Fitness Landscapes Allows for Cross-species Adaptation of a Horizontally Transferred Gene
title_short Evolutionary “Crowdsourcing”: Alignment of Fitness Landscapes Allows for Cross-species Adaptation of a Horizontally Transferred Gene
title_sort evolutionary “crowdsourcing”: alignment of fitness landscapes allows for cross-species adaptation of a horizontally transferred gene
topic Discoveries
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10657783/
https://www.ncbi.nlm.nih.gov/pubmed/37931146
http://dx.doi.org/10.1093/molbev/msad237
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