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A reference assembly for the legume cover crop hairy vetch (Vicia villosa)

Vicia villosa is an incompletely domesticated annual legume of the Fabaceae family native to Europe and Western Asia. V. villosa is widely used as a cover crop and forage due to its ability to withstand harsh winters. Here, we generated a reference-quality genome assembly (Vvill1.0) from low error-r...

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Autores principales: Fuller, Tyson, Bickhart, Derek M., Koch, Lisa M., Kucek, Lisa Kissing, Ali, Shahjahan, Mangelson, Haley, Monteros, Maria J., Hernandez, Timothy, Smith, Timothy P. L., Riday, Heathcliffe, Sullivan, Michael L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: GigaScience Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10659084/
https://www.ncbi.nlm.nih.gov/pubmed/38023065
http://dx.doi.org/10.46471/gigabyte.98
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author Fuller, Tyson
Bickhart, Derek M.
Koch, Lisa M.
Kucek, Lisa Kissing
Ali, Shahjahan
Mangelson, Haley
Monteros, Maria J.
Hernandez, Timothy
Smith, Timothy P. L.
Riday, Heathcliffe
Sullivan, Michael L.
author_facet Fuller, Tyson
Bickhart, Derek M.
Koch, Lisa M.
Kucek, Lisa Kissing
Ali, Shahjahan
Mangelson, Haley
Monteros, Maria J.
Hernandez, Timothy
Smith, Timothy P. L.
Riday, Heathcliffe
Sullivan, Michael L.
author_sort Fuller, Tyson
collection PubMed
description Vicia villosa is an incompletely domesticated annual legume of the Fabaceae family native to Europe and Western Asia. V. villosa is widely used as a cover crop and forage due to its ability to withstand harsh winters. Here, we generated a reference-quality genome assembly (Vvill1.0) from low error-rate long-sequence reads to improve the genetic-based trait selection of this species. Our Vvill1.0 assembly includes seven scaffolds corresponding to the seven estimated linkage groups and comprising approximately 68% of the total genome size of 2.03 Gbp. This assembly is expected to be a useful resource for genetically improving this emerging cover crop species and provide useful insights into legume genomics and plant genome evolution.
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spelling pubmed-106590842023-11-13 A reference assembly for the legume cover crop hairy vetch (Vicia villosa) Fuller, Tyson Bickhart, Derek M. Koch, Lisa M. Kucek, Lisa Kissing Ali, Shahjahan Mangelson, Haley Monteros, Maria J. Hernandez, Timothy Smith, Timothy P. L. Riday, Heathcliffe Sullivan, Michael L. GigaByte Data Release Vicia villosa is an incompletely domesticated annual legume of the Fabaceae family native to Europe and Western Asia. V. villosa is widely used as a cover crop and forage due to its ability to withstand harsh winters. Here, we generated a reference-quality genome assembly (Vvill1.0) from low error-rate long-sequence reads to improve the genetic-based trait selection of this species. Our Vvill1.0 assembly includes seven scaffolds corresponding to the seven estimated linkage groups and comprising approximately 68% of the total genome size of 2.03 Gbp. This assembly is expected to be a useful resource for genetically improving this emerging cover crop species and provide useful insights into legume genomics and plant genome evolution. GigaScience Press 2023-11-13 /pmc/articles/PMC10659084/ /pubmed/38023065 http://dx.doi.org/10.46471/gigabyte.98 Text en © The Author(s) 2023. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Data Release
Fuller, Tyson
Bickhart, Derek M.
Koch, Lisa M.
Kucek, Lisa Kissing
Ali, Shahjahan
Mangelson, Haley
Monteros, Maria J.
Hernandez, Timothy
Smith, Timothy P. L.
Riday, Heathcliffe
Sullivan, Michael L.
A reference assembly for the legume cover crop hairy vetch (Vicia villosa)
title A reference assembly for the legume cover crop hairy vetch (Vicia villosa)
title_full A reference assembly for the legume cover crop hairy vetch (Vicia villosa)
title_fullStr A reference assembly for the legume cover crop hairy vetch (Vicia villosa)
title_full_unstemmed A reference assembly for the legume cover crop hairy vetch (Vicia villosa)
title_short A reference assembly for the legume cover crop hairy vetch (Vicia villosa)
title_sort reference assembly for the legume cover crop hairy vetch (vicia villosa)
topic Data Release
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10659084/
https://www.ncbi.nlm.nih.gov/pubmed/38023065
http://dx.doi.org/10.46471/gigabyte.98
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