Cargando…

Intrinsically disordered regions and RNA binding domains contribute to protein enrichment in biomolecular condensates in Xenopus oocytes

Proteins containing both intrinsically disordered regions (IDRs) and RNA binding domains (RBDs) can phase separate in vitro, forming bodies similar to cellular biomolecular condensates. However, how IDR and RBD domains contribute to in vivo recruitment of proteins to biomolecular condensates remains...

Descripción completa

Detalles Bibliográficos
Autores principales: O’Connell, Liam C., Johnson, Victoria, Hutton, Anika K., Otis, Jessica P., Murthy, Anastasia C., Liang, Mark C., Wang, Szu-Huan, Fawzi, Nicolas L., Mowry, Kimberly L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10659413/
https://www.ncbi.nlm.nih.gov/pubmed/37986933
http://dx.doi.org/10.1101/2023.11.10.566489
_version_ 1785148316569305088
author O’Connell, Liam C.
Johnson, Victoria
Hutton, Anika K.
Otis, Jessica P.
Murthy, Anastasia C.
Liang, Mark C.
Wang, Szu-Huan
Fawzi, Nicolas L.
Mowry, Kimberly L.
author_facet O’Connell, Liam C.
Johnson, Victoria
Hutton, Anika K.
Otis, Jessica P.
Murthy, Anastasia C.
Liang, Mark C.
Wang, Szu-Huan
Fawzi, Nicolas L.
Mowry, Kimberly L.
author_sort O’Connell, Liam C.
collection PubMed
description Proteins containing both intrinsically disordered regions (IDRs) and RNA binding domains (RBDs) can phase separate in vitro, forming bodies similar to cellular biomolecular condensates. However, how IDR and RBD domains contribute to in vivo recruitment of proteins to biomolecular condensates remains poorly understood. Here, we analyzed the roles of IDRs and RBDs in L-bodies, biomolecular condensates present in Xenopus oocytes. We show that a cytoplasmic isoform of hnRNPAB, which contains two RBDs and an IDR, is highly enriched in L-bodies. While both of these domains contribute to hnRNPAB self-association and phase separation in vitro and mediate enrichment into L-bodies in oocytes, neither the RBDs nor the IDR replicate the localization of full-length hnRNPAB. Our results suggest a model where the additive effects of the IDR and RBDs regulate hnRNPAB partitioning into L-bodies. This model likely has widespread applications as proteins containing RBD and IDR domains are common biomolecular condensate residents.
format Online
Article
Text
id pubmed-10659413
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Cold Spring Harbor Laboratory
record_format MEDLINE/PubMed
spelling pubmed-106594132023-11-20 Intrinsically disordered regions and RNA binding domains contribute to protein enrichment in biomolecular condensates in Xenopus oocytes O’Connell, Liam C. Johnson, Victoria Hutton, Anika K. Otis, Jessica P. Murthy, Anastasia C. Liang, Mark C. Wang, Szu-Huan Fawzi, Nicolas L. Mowry, Kimberly L. bioRxiv Article Proteins containing both intrinsically disordered regions (IDRs) and RNA binding domains (RBDs) can phase separate in vitro, forming bodies similar to cellular biomolecular condensates. However, how IDR and RBD domains contribute to in vivo recruitment of proteins to biomolecular condensates remains poorly understood. Here, we analyzed the roles of IDRs and RBDs in L-bodies, biomolecular condensates present in Xenopus oocytes. We show that a cytoplasmic isoform of hnRNPAB, which contains two RBDs and an IDR, is highly enriched in L-bodies. While both of these domains contribute to hnRNPAB self-association and phase separation in vitro and mediate enrichment into L-bodies in oocytes, neither the RBDs nor the IDR replicate the localization of full-length hnRNPAB. Our results suggest a model where the additive effects of the IDR and RBDs regulate hnRNPAB partitioning into L-bodies. This model likely has widespread applications as proteins containing RBD and IDR domains are common biomolecular condensate residents. Cold Spring Harbor Laboratory 2023-11-10 /pmc/articles/PMC10659413/ /pubmed/37986933 http://dx.doi.org/10.1101/2023.11.10.566489 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator.
spellingShingle Article
O’Connell, Liam C.
Johnson, Victoria
Hutton, Anika K.
Otis, Jessica P.
Murthy, Anastasia C.
Liang, Mark C.
Wang, Szu-Huan
Fawzi, Nicolas L.
Mowry, Kimberly L.
Intrinsically disordered regions and RNA binding domains contribute to protein enrichment in biomolecular condensates in Xenopus oocytes
title Intrinsically disordered regions and RNA binding domains contribute to protein enrichment in biomolecular condensates in Xenopus oocytes
title_full Intrinsically disordered regions and RNA binding domains contribute to protein enrichment in biomolecular condensates in Xenopus oocytes
title_fullStr Intrinsically disordered regions and RNA binding domains contribute to protein enrichment in biomolecular condensates in Xenopus oocytes
title_full_unstemmed Intrinsically disordered regions and RNA binding domains contribute to protein enrichment in biomolecular condensates in Xenopus oocytes
title_short Intrinsically disordered regions and RNA binding domains contribute to protein enrichment in biomolecular condensates in Xenopus oocytes
title_sort intrinsically disordered regions and rna binding domains contribute to protein enrichment in biomolecular condensates in xenopus oocytes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10659413/
https://www.ncbi.nlm.nih.gov/pubmed/37986933
http://dx.doi.org/10.1101/2023.11.10.566489
work_keys_str_mv AT oconnellliamc intrinsicallydisorderedregionsandrnabindingdomainscontributetoproteinenrichmentinbiomolecularcondensatesinxenopusoocytes
AT johnsonvictoria intrinsicallydisorderedregionsandrnabindingdomainscontributetoproteinenrichmentinbiomolecularcondensatesinxenopusoocytes
AT huttonanikak intrinsicallydisorderedregionsandrnabindingdomainscontributetoproteinenrichmentinbiomolecularcondensatesinxenopusoocytes
AT otisjessicap intrinsicallydisorderedregionsandrnabindingdomainscontributetoproteinenrichmentinbiomolecularcondensatesinxenopusoocytes
AT murthyanastasiac intrinsicallydisorderedregionsandrnabindingdomainscontributetoproteinenrichmentinbiomolecularcondensatesinxenopusoocytes
AT liangmarkc intrinsicallydisorderedregionsandrnabindingdomainscontributetoproteinenrichmentinbiomolecularcondensatesinxenopusoocytes
AT wangszuhuan intrinsicallydisorderedregionsandrnabindingdomainscontributetoproteinenrichmentinbiomolecularcondensatesinxenopusoocytes
AT fawzinicolasl intrinsicallydisorderedregionsandrnabindingdomainscontributetoproteinenrichmentinbiomolecularcondensatesinxenopusoocytes
AT mowrykimberlyl intrinsicallydisorderedregionsandrnabindingdomainscontributetoproteinenrichmentinbiomolecularcondensatesinxenopusoocytes