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Intrinsically disordered regions and RNA binding domains contribute to protein enrichment in biomolecular condensates in Xenopus oocytes
Proteins containing both intrinsically disordered regions (IDRs) and RNA binding domains (RBDs) can phase separate in vitro, forming bodies similar to cellular biomolecular condensates. However, how IDR and RBD domains contribute to in vivo recruitment of proteins to biomolecular condensates remains...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cold Spring Harbor Laboratory
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10659413/ https://www.ncbi.nlm.nih.gov/pubmed/37986933 http://dx.doi.org/10.1101/2023.11.10.566489 |
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author | O’Connell, Liam C. Johnson, Victoria Hutton, Anika K. Otis, Jessica P. Murthy, Anastasia C. Liang, Mark C. Wang, Szu-Huan Fawzi, Nicolas L. Mowry, Kimberly L. |
author_facet | O’Connell, Liam C. Johnson, Victoria Hutton, Anika K. Otis, Jessica P. Murthy, Anastasia C. Liang, Mark C. Wang, Szu-Huan Fawzi, Nicolas L. Mowry, Kimberly L. |
author_sort | O’Connell, Liam C. |
collection | PubMed |
description | Proteins containing both intrinsically disordered regions (IDRs) and RNA binding domains (RBDs) can phase separate in vitro, forming bodies similar to cellular biomolecular condensates. However, how IDR and RBD domains contribute to in vivo recruitment of proteins to biomolecular condensates remains poorly understood. Here, we analyzed the roles of IDRs and RBDs in L-bodies, biomolecular condensates present in Xenopus oocytes. We show that a cytoplasmic isoform of hnRNPAB, which contains two RBDs and an IDR, is highly enriched in L-bodies. While both of these domains contribute to hnRNPAB self-association and phase separation in vitro and mediate enrichment into L-bodies in oocytes, neither the RBDs nor the IDR replicate the localization of full-length hnRNPAB. Our results suggest a model where the additive effects of the IDR and RBDs regulate hnRNPAB partitioning into L-bodies. This model likely has widespread applications as proteins containing RBD and IDR domains are common biomolecular condensate residents. |
format | Online Article Text |
id | pubmed-10659413 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Cold Spring Harbor Laboratory |
record_format | MEDLINE/PubMed |
spelling | pubmed-106594132023-11-20 Intrinsically disordered regions and RNA binding domains contribute to protein enrichment in biomolecular condensates in Xenopus oocytes O’Connell, Liam C. Johnson, Victoria Hutton, Anika K. Otis, Jessica P. Murthy, Anastasia C. Liang, Mark C. Wang, Szu-Huan Fawzi, Nicolas L. Mowry, Kimberly L. bioRxiv Article Proteins containing both intrinsically disordered regions (IDRs) and RNA binding domains (RBDs) can phase separate in vitro, forming bodies similar to cellular biomolecular condensates. However, how IDR and RBD domains contribute to in vivo recruitment of proteins to biomolecular condensates remains poorly understood. Here, we analyzed the roles of IDRs and RBDs in L-bodies, biomolecular condensates present in Xenopus oocytes. We show that a cytoplasmic isoform of hnRNPAB, which contains two RBDs and an IDR, is highly enriched in L-bodies. While both of these domains contribute to hnRNPAB self-association and phase separation in vitro and mediate enrichment into L-bodies in oocytes, neither the RBDs nor the IDR replicate the localization of full-length hnRNPAB. Our results suggest a model where the additive effects of the IDR and RBDs regulate hnRNPAB partitioning into L-bodies. This model likely has widespread applications as proteins containing RBD and IDR domains are common biomolecular condensate residents. Cold Spring Harbor Laboratory 2023-11-10 /pmc/articles/PMC10659413/ /pubmed/37986933 http://dx.doi.org/10.1101/2023.11.10.566489 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator. |
spellingShingle | Article O’Connell, Liam C. Johnson, Victoria Hutton, Anika K. Otis, Jessica P. Murthy, Anastasia C. Liang, Mark C. Wang, Szu-Huan Fawzi, Nicolas L. Mowry, Kimberly L. Intrinsically disordered regions and RNA binding domains contribute to protein enrichment in biomolecular condensates in Xenopus oocytes |
title | Intrinsically disordered regions and RNA binding domains contribute to protein enrichment in biomolecular condensates in Xenopus oocytes |
title_full | Intrinsically disordered regions and RNA binding domains contribute to protein enrichment in biomolecular condensates in Xenopus oocytes |
title_fullStr | Intrinsically disordered regions and RNA binding domains contribute to protein enrichment in biomolecular condensates in Xenopus oocytes |
title_full_unstemmed | Intrinsically disordered regions and RNA binding domains contribute to protein enrichment in biomolecular condensates in Xenopus oocytes |
title_short | Intrinsically disordered regions and RNA binding domains contribute to protein enrichment in biomolecular condensates in Xenopus oocytes |
title_sort | intrinsically disordered regions and rna binding domains contribute to protein enrichment in biomolecular condensates in xenopus oocytes |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10659413/ https://www.ncbi.nlm.nih.gov/pubmed/37986933 http://dx.doi.org/10.1101/2023.11.10.566489 |
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