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Towards long-tailed, multi-label disease classification from chest X-ray: Overview of the CXR-LT challenge

Many real-world image recognition problems, such as diagnostic medical imaging exams, are “long-tailed” – there are a few common findings followed by many more relatively rare conditions. In chest radiography, diagnosis is both a long-tailed and multi-label problem, as patients often present with mu...

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Autores principales: Holste, Gregory, Zhou, Yiliang, Wang, Song, Jaiswal, Ajay, Lin, Mingquan, Zhuge, Sherry, Yang, Yuzhe, Kim, Dongkyun, Nguyen-Mau, Trong-Hieu, Tran, Minh-Triet, Jeong, Jaehyup, Park, Wongi, Ryu, Jongbin, Hong, Feng, Verma, Arsh, Yamagishi, Yosuke, Kim, Changhyun, Seo, Hyeryeong, Kang, Myungjoo, Celi, Leo Anthony, Lu, Zhiyong, Summers, Ronald M., Shih, George, Wang, Zhangyang, Peng, Yifan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cornell University 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10659524/
https://www.ncbi.nlm.nih.gov/pubmed/37986726
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author Holste, Gregory
Zhou, Yiliang
Wang, Song
Jaiswal, Ajay
Lin, Mingquan
Zhuge, Sherry
Yang, Yuzhe
Kim, Dongkyun
Nguyen-Mau, Trong-Hieu
Tran, Minh-Triet
Jeong, Jaehyup
Park, Wongi
Ryu, Jongbin
Hong, Feng
Verma, Arsh
Yamagishi, Yosuke
Kim, Changhyun
Seo, Hyeryeong
Kang, Myungjoo
Celi, Leo Anthony
Lu, Zhiyong
Summers, Ronald M.
Shih, George
Wang, Zhangyang
Peng, Yifan
author_facet Holste, Gregory
Zhou, Yiliang
Wang, Song
Jaiswal, Ajay
Lin, Mingquan
Zhuge, Sherry
Yang, Yuzhe
Kim, Dongkyun
Nguyen-Mau, Trong-Hieu
Tran, Minh-Triet
Jeong, Jaehyup
Park, Wongi
Ryu, Jongbin
Hong, Feng
Verma, Arsh
Yamagishi, Yosuke
Kim, Changhyun
Seo, Hyeryeong
Kang, Myungjoo
Celi, Leo Anthony
Lu, Zhiyong
Summers, Ronald M.
Shih, George
Wang, Zhangyang
Peng, Yifan
author_sort Holste, Gregory
collection PubMed
description Many real-world image recognition problems, such as diagnostic medical imaging exams, are “long-tailed” – there are a few common findings followed by many more relatively rare conditions. In chest radiography, diagnosis is both a long-tailed and multi-label problem, as patients often present with multiple findings simultaneously. While researchers have begun to study the problem of long-tailed learning in medical image recognition, few have studied the interaction of label imbalance and label co-occurrence posed by long-tailed, multi-label disease classification. To engage with the research community on this emerging topic, we conducted an open challenge, CXR-LT, on long-tailed, multi-label thorax disease classification from chest X-rays (CXRs). We publicly release a large-scale benchmark dataset of over 350,000 CXRs, each labeled with at least one of 26 clinical findings following a long-tailed distribution. We synthesize common themes of top-performing solutions, providing practical recommendations for long-tailed, multi-label medical image classification. Finally, we use these insights to propose a path forward involving vision-language foundation models for few- and zero-shot disease classification.
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spelling pubmed-106595242023-10-24 Towards long-tailed, multi-label disease classification from chest X-ray: Overview of the CXR-LT challenge Holste, Gregory Zhou, Yiliang Wang, Song Jaiswal, Ajay Lin, Mingquan Zhuge, Sherry Yang, Yuzhe Kim, Dongkyun Nguyen-Mau, Trong-Hieu Tran, Minh-Triet Jeong, Jaehyup Park, Wongi Ryu, Jongbin Hong, Feng Verma, Arsh Yamagishi, Yosuke Kim, Changhyun Seo, Hyeryeong Kang, Myungjoo Celi, Leo Anthony Lu, Zhiyong Summers, Ronald M. Shih, George Wang, Zhangyang Peng, Yifan ArXiv Article Many real-world image recognition problems, such as diagnostic medical imaging exams, are “long-tailed” – there are a few common findings followed by many more relatively rare conditions. In chest radiography, diagnosis is both a long-tailed and multi-label problem, as patients often present with multiple findings simultaneously. While researchers have begun to study the problem of long-tailed learning in medical image recognition, few have studied the interaction of label imbalance and label co-occurrence posed by long-tailed, multi-label disease classification. To engage with the research community on this emerging topic, we conducted an open challenge, CXR-LT, on long-tailed, multi-label thorax disease classification from chest X-rays (CXRs). We publicly release a large-scale benchmark dataset of over 350,000 CXRs, each labeled with at least one of 26 clinical findings following a long-tailed distribution. We synthesize common themes of top-performing solutions, providing practical recommendations for long-tailed, multi-label medical image classification. Finally, we use these insights to propose a path forward involving vision-language foundation models for few- and zero-shot disease classification. Cornell University 2023-10-24 /pmc/articles/PMC10659524/ /pubmed/37986726 Text en https://creativecommons.org/licenses/by-nc-sa/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License (https://creativecommons.org/licenses/by-nc-sa/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format for noncommercial purposes only, and only so long as attribution is given to the creator. If you remix, adapt, or build upon the material, you must license the modified material under identical terms.
spellingShingle Article
Holste, Gregory
Zhou, Yiliang
Wang, Song
Jaiswal, Ajay
Lin, Mingquan
Zhuge, Sherry
Yang, Yuzhe
Kim, Dongkyun
Nguyen-Mau, Trong-Hieu
Tran, Minh-Triet
Jeong, Jaehyup
Park, Wongi
Ryu, Jongbin
Hong, Feng
Verma, Arsh
Yamagishi, Yosuke
Kim, Changhyun
Seo, Hyeryeong
Kang, Myungjoo
Celi, Leo Anthony
Lu, Zhiyong
Summers, Ronald M.
Shih, George
Wang, Zhangyang
Peng, Yifan
Towards long-tailed, multi-label disease classification from chest X-ray: Overview of the CXR-LT challenge
title Towards long-tailed, multi-label disease classification from chest X-ray: Overview of the CXR-LT challenge
title_full Towards long-tailed, multi-label disease classification from chest X-ray: Overview of the CXR-LT challenge
title_fullStr Towards long-tailed, multi-label disease classification from chest X-ray: Overview of the CXR-LT challenge
title_full_unstemmed Towards long-tailed, multi-label disease classification from chest X-ray: Overview of the CXR-LT challenge
title_short Towards long-tailed, multi-label disease classification from chest X-ray: Overview of the CXR-LT challenge
title_sort towards long-tailed, multi-label disease classification from chest x-ray: overview of the cxr-lt challenge
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10659524/
https://www.ncbi.nlm.nih.gov/pubmed/37986726
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