Cargando…

Construction and validation of a prognostic model for tongue cancer based on three genes signature

Tongue squamous cell carcinoma (TSCC) has a poor prognosis and destructive characteristics. Reliable biomarkers are urgently required to predict disease outcomes and to guide TSCC treatment. This study aimed to develop a multigene signature and prognostic nomogram that can accurately predict the pro...

Descripción completa

Detalles Bibliográficos
Autores principales: Tan, Haosheng, Huang, Hui, Yang, Huaiyu, Qian, Jiaxin, Wei, Liyuan, Liu, Wensheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Lippincott Williams & Wilkins 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10659661/
https://www.ncbi.nlm.nih.gov/pubmed/37986320
http://dx.doi.org/10.1097/MD.0000000000036097
_version_ 1785148359772733440
author Tan, Haosheng
Huang, Hui
Yang, Huaiyu
Qian, Jiaxin
Wei, Liyuan
Liu, Wensheng
author_facet Tan, Haosheng
Huang, Hui
Yang, Huaiyu
Qian, Jiaxin
Wei, Liyuan
Liu, Wensheng
author_sort Tan, Haosheng
collection PubMed
description Tongue squamous cell carcinoma (TSCC) has a poor prognosis and destructive characteristics. Reliable biomarkers are urgently required to predict disease outcomes and to guide TSCC treatment. This study aimed to develop a multigene signature and prognostic nomogram that can accurately predict the prognosis of patients with TSCC. We screened differentially expressed genes associated with TSCC using The Cancer Genome Atlas dataset. Based on this, we developed a new multi-mRNA gene signature using univariate Cox regression, Least Absolute Shrinkage and Selection Operator regression, and multivariate Cox regression. We used the concordance index to evaluate the accuracy of this new multigene model. Moreover, we performed receiver operating characteristic and Kaplan–Meier survival analyses to assess the predictive ability of the new multigene model. In addition, we created a prognostic nomogram incorporating clinical and pathological characteristics, with the aim of enhancing the adaptability of this model in practical clinical settings. We successfully developed a new prognostic model based on the expression levels of these 3 mRNAs that can be used to predict the prognosis of patients with TSCC. This prediction model includes 3 genes: KRT33B, CDKN2A, and CA9. In the validation set, the concordance index of this model was 0.851, and the area under the curve was 0.778 and 0.821 in the training and validation sets, respectively. Kaplan–Meier survival analysis showed that regardless of whether it was in the training or validation set, the prognosis of high-risk patients was significantly worse than that of low-risk patients (P < .001). Multivariate Cox regression analysis revealed that this model was an independent prognostic factor for patients with TSCC (P < .001). Our study suggests that this 3-gene signature model has a high level of accuracy and predictive ability, is closely related to the overall survival rate of patients with TSCC, and can independently predict the prognosis of TSCC patients with high accuracy and predictive ability.
format Online
Article
Text
id pubmed-10659661
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Lippincott Williams & Wilkins
record_format MEDLINE/PubMed
spelling pubmed-106596612023-11-17 Construction and validation of a prognostic model for tongue cancer based on three genes signature Tan, Haosheng Huang, Hui Yang, Huaiyu Qian, Jiaxin Wei, Liyuan Liu, Wensheng Medicine (Baltimore) 5700 Tongue squamous cell carcinoma (TSCC) has a poor prognosis and destructive characteristics. Reliable biomarkers are urgently required to predict disease outcomes and to guide TSCC treatment. This study aimed to develop a multigene signature and prognostic nomogram that can accurately predict the prognosis of patients with TSCC. We screened differentially expressed genes associated with TSCC using The Cancer Genome Atlas dataset. Based on this, we developed a new multi-mRNA gene signature using univariate Cox regression, Least Absolute Shrinkage and Selection Operator regression, and multivariate Cox regression. We used the concordance index to evaluate the accuracy of this new multigene model. Moreover, we performed receiver operating characteristic and Kaplan–Meier survival analyses to assess the predictive ability of the new multigene model. In addition, we created a prognostic nomogram incorporating clinical and pathological characteristics, with the aim of enhancing the adaptability of this model in practical clinical settings. We successfully developed a new prognostic model based on the expression levels of these 3 mRNAs that can be used to predict the prognosis of patients with TSCC. This prediction model includes 3 genes: KRT33B, CDKN2A, and CA9. In the validation set, the concordance index of this model was 0.851, and the area under the curve was 0.778 and 0.821 in the training and validation sets, respectively. Kaplan–Meier survival analysis showed that regardless of whether it was in the training or validation set, the prognosis of high-risk patients was significantly worse than that of low-risk patients (P < .001). Multivariate Cox regression analysis revealed that this model was an independent prognostic factor for patients with TSCC (P < .001). Our study suggests that this 3-gene signature model has a high level of accuracy and predictive ability, is closely related to the overall survival rate of patients with TSCC, and can independently predict the prognosis of TSCC patients with high accuracy and predictive ability. Lippincott Williams & Wilkins 2023-11-17 /pmc/articles/PMC10659661/ /pubmed/37986320 http://dx.doi.org/10.1097/MD.0000000000036097 Text en Copyright © 2023 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License 4.0 (CCBY) (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle 5700
Tan, Haosheng
Huang, Hui
Yang, Huaiyu
Qian, Jiaxin
Wei, Liyuan
Liu, Wensheng
Construction and validation of a prognostic model for tongue cancer based on three genes signature
title Construction and validation of a prognostic model for tongue cancer based on three genes signature
title_full Construction and validation of a prognostic model for tongue cancer based on three genes signature
title_fullStr Construction and validation of a prognostic model for tongue cancer based on three genes signature
title_full_unstemmed Construction and validation of a prognostic model for tongue cancer based on three genes signature
title_short Construction and validation of a prognostic model for tongue cancer based on three genes signature
title_sort construction and validation of a prognostic model for tongue cancer based on three genes signature
topic 5700
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10659661/
https://www.ncbi.nlm.nih.gov/pubmed/37986320
http://dx.doi.org/10.1097/MD.0000000000036097
work_keys_str_mv AT tanhaosheng constructionandvalidationofaprognosticmodelfortonguecancerbasedonthreegenessignature
AT huanghui constructionandvalidationofaprognosticmodelfortonguecancerbasedonthreegenessignature
AT yanghuaiyu constructionandvalidationofaprognosticmodelfortonguecancerbasedonthreegenessignature
AT qianjiaxin constructionandvalidationofaprognosticmodelfortonguecancerbasedonthreegenessignature
AT weiliyuan constructionandvalidationofaprognosticmodelfortonguecancerbasedonthreegenessignature
AT liuwensheng constructionandvalidationofaprognosticmodelfortonguecancerbasedonthreegenessignature