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Systematic Approach Revealed SERPING1 Splicing-Affecting Variants to be Highly Represented in the Czech National HAE Cohort
Hereditary angioedema due to C1 inhibitor deficiency (C1-INH-HAE) is a rare and life-threatening condition characterized by recurrent localized edema. We conducted a systematic screening of SERPING1 defects in a cohort of 207 Czech patients from 85 families with C1-INH-HAE. Our workflow involved a c...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Springer US
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10661775/ https://www.ncbi.nlm.nih.gov/pubmed/37620742 http://dx.doi.org/10.1007/s10875-023-01565-w |
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author | Grombirikova, Hana Bily, Viktor Soucek, Premysl Kramarek, Michal Hakl, Roman Ballonova, Lucie Ravcukova, Barbora Ricna, Dita Kozena, Karolina Kratochvilova, Lucie Sobotkova, Marta Zachova, Radana Kuklinek, Pavel Kralickova, Pavlina Krcmova, Irena Hanzlikova, Jana Vachova, Martina Krystufkova, Olga Dankova, Eva Jesenak, Milos Novackova, Martina Svoboda, Michal Litzman, Jiri Freiberger, Tomas |
author_facet | Grombirikova, Hana Bily, Viktor Soucek, Premysl Kramarek, Michal Hakl, Roman Ballonova, Lucie Ravcukova, Barbora Ricna, Dita Kozena, Karolina Kratochvilova, Lucie Sobotkova, Marta Zachova, Radana Kuklinek, Pavel Kralickova, Pavlina Krcmova, Irena Hanzlikova, Jana Vachova, Martina Krystufkova, Olga Dankova, Eva Jesenak, Milos Novackova, Martina Svoboda, Michal Litzman, Jiri Freiberger, Tomas |
author_sort | Grombirikova, Hana |
collection | PubMed |
description | Hereditary angioedema due to C1 inhibitor deficiency (C1-INH-HAE) is a rare and life-threatening condition characterized by recurrent localized edema. We conducted a systematic screening of SERPING1 defects in a cohort of 207 Czech patients from 85 families with C1-INH-HAE. Our workflow involved a combined strategy of sequencing extended to UTR and deep intronic regions, advanced in silico prediction tools, and mRNA-based functional assays. This approach allowed us to detect a causal variant in all families except one and to identify a total of 56 different variants, including 5 novel variants that are likely to be causal. We further investigated the functional impact of two splicing variants, namely c.550 + 3A > C and c.686-7C > G using minigene assays and RT-PCR mRNA analysis. Notably, our cohort showed a considerably higher proportion of detected splicing variants compared to other central European populations and the LOVD database. Moreover, our findings revealed a significant association between HAE type 1 missense variants and a delayed HAE onset when compared to null variants. We also observed a significant correlation between the presence of the SERPING1 variant c.-21 T > C in the trans position to causal variants and the frequency of attacks per year, disease onset, as well as Clinical severity score. Overall, our study provides new insights into the genetic landscape of C1-INH-HAE in the Czech population, including the identification of novel variants and a better understanding of genotype–phenotype correlations. Our findings also highlight the importance of comprehensive screening strategies and functional analyses in improving the C1-INH-HAE diagnosis and management. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s10875-023-01565-w. |
format | Online Article Text |
id | pubmed-10661775 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-106617752023-08-25 Systematic Approach Revealed SERPING1 Splicing-Affecting Variants to be Highly Represented in the Czech National HAE Cohort Grombirikova, Hana Bily, Viktor Soucek, Premysl Kramarek, Michal Hakl, Roman Ballonova, Lucie Ravcukova, Barbora Ricna, Dita Kozena, Karolina Kratochvilova, Lucie Sobotkova, Marta Zachova, Radana Kuklinek, Pavel Kralickova, Pavlina Krcmova, Irena Hanzlikova, Jana Vachova, Martina Krystufkova, Olga Dankova, Eva Jesenak, Milos Novackova, Martina Svoboda, Michal Litzman, Jiri Freiberger, Tomas J Clin Immunol Original Article Hereditary angioedema due to C1 inhibitor deficiency (C1-INH-HAE) is a rare and life-threatening condition characterized by recurrent localized edema. We conducted a systematic screening of SERPING1 defects in a cohort of 207 Czech patients from 85 families with C1-INH-HAE. Our workflow involved a combined strategy of sequencing extended to UTR and deep intronic regions, advanced in silico prediction tools, and mRNA-based functional assays. This approach allowed us to detect a causal variant in all families except one and to identify a total of 56 different variants, including 5 novel variants that are likely to be causal. We further investigated the functional impact of two splicing variants, namely c.550 + 3A > C and c.686-7C > G using minigene assays and RT-PCR mRNA analysis. Notably, our cohort showed a considerably higher proportion of detected splicing variants compared to other central European populations and the LOVD database. Moreover, our findings revealed a significant association between HAE type 1 missense variants and a delayed HAE onset when compared to null variants. We also observed a significant correlation between the presence of the SERPING1 variant c.-21 T > C in the trans position to causal variants and the frequency of attacks per year, disease onset, as well as Clinical severity score. Overall, our study provides new insights into the genetic landscape of C1-INH-HAE in the Czech population, including the identification of novel variants and a better understanding of genotype–phenotype correlations. Our findings also highlight the importance of comprehensive screening strategies and functional analyses in improving the C1-INH-HAE diagnosis and management. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s10875-023-01565-w. Springer US 2023-08-25 2023 /pmc/articles/PMC10661775/ /pubmed/37620742 http://dx.doi.org/10.1007/s10875-023-01565-w Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Original Article Grombirikova, Hana Bily, Viktor Soucek, Premysl Kramarek, Michal Hakl, Roman Ballonova, Lucie Ravcukova, Barbora Ricna, Dita Kozena, Karolina Kratochvilova, Lucie Sobotkova, Marta Zachova, Radana Kuklinek, Pavel Kralickova, Pavlina Krcmova, Irena Hanzlikova, Jana Vachova, Martina Krystufkova, Olga Dankova, Eva Jesenak, Milos Novackova, Martina Svoboda, Michal Litzman, Jiri Freiberger, Tomas Systematic Approach Revealed SERPING1 Splicing-Affecting Variants to be Highly Represented in the Czech National HAE Cohort |
title | Systematic Approach Revealed SERPING1 Splicing-Affecting Variants to be Highly Represented in the Czech National HAE Cohort |
title_full | Systematic Approach Revealed SERPING1 Splicing-Affecting Variants to be Highly Represented in the Czech National HAE Cohort |
title_fullStr | Systematic Approach Revealed SERPING1 Splicing-Affecting Variants to be Highly Represented in the Czech National HAE Cohort |
title_full_unstemmed | Systematic Approach Revealed SERPING1 Splicing-Affecting Variants to be Highly Represented in the Czech National HAE Cohort |
title_short | Systematic Approach Revealed SERPING1 Splicing-Affecting Variants to be Highly Represented in the Czech National HAE Cohort |
title_sort | systematic approach revealed serping1 splicing-affecting variants to be highly represented in the czech national hae cohort |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10661775/ https://www.ncbi.nlm.nih.gov/pubmed/37620742 http://dx.doi.org/10.1007/s10875-023-01565-w |
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