Cargando…

PanomiR: a systems biology framework for analysis of multi-pathway targeting by miRNAs

Charting microRNA (miRNA) regulation across pathways is key to characterizing their function. Yet, no method currently exists that can quantify how miRNAs regulate multiple interconnected pathways or prioritize them for their ability to regulate coordinate transcriptional programs. Existing methods...

Descripción completa

Detalles Bibliográficos
Autores principales:	Naderi Yeganeh, Pourya, Teo, Yue Y, Karagkouni, Dimitra, Pita-Juárez, Yered, Morgan, Sarah L, Slack, Frank J, Vlachos, Ioannis S, Hide, Winston A
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2023
Materias:	Problem Solving Protocol
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10661971/ https://www.ncbi.nlm.nih.gov/pubmed/37985452 http://dx.doi.org/10.1093/bib/bbad418

Ejemplares similares

Most Pathways Can Be Related to the Pathogenesis of Alzheimer’s Disease
por: Morgan, Sarah L., et al.
Publicado: (2022)

ExosomePurity: tumour purity deconvolution in serum exosomes based on miRNA signatures
por: Wu, Tao, et al.
Publicado: (2023)

CAFU: a Galaxy framework for exploring unmapped RNA-Seq data
por: Chen, Siyuan, et al.
Publicado: (2019)

A statistical framework for predicting critical regions of p53-dependent enhancers
por: Niu, Xiaohui, et al.
Publicado: (2020)

PCfun: a hybrid computational framework for systematic characterization of protein complex function
por: Sharma, Varun S, et al.
Publicado: (2022)

Integrating multi-omics summary data using a Mendelian randomization framework
por: Jin, Chong, et al.
Publicado: (2022)

PLSDA-batch: a multivariate framework to correct for batch effects in microbiome data
por: Wang, Yiwen, et al.
Publicado: (2023)

EMNUSS: a deep learning framework for secondary structure annotation in cryo-EM maps
por: He, Jiahua, et al.
Publicado: (2021)

NiPTUNE: an automated pipeline for noninvasive prenatal testing in an accurate, integrative and flexible framework
por: Duboc, Véronique, et al.
Publicado: (2021)

EnGens: a computational framework for generation and analysis of representative protein conformational ensembles
por: Conev, Anja, et al.
Publicado: (2023)

An efficient multi-locus mixed model framework for the detection of small and linked QTLs in F(2)
por: Wen, Yang-Jun, et al.
Publicado: (2018)

STALLION: a stacking-based ensemble learning framework for prokaryotic lysine acetylation site prediction
por: Basith, Shaherin, et al.
Publicado: (2021)

RadSigBench: a framework for benchmarking functional genomics signatures of cancer cell radiosensitivity
por: O’Connor, John D, et al.
Publicado: (2022)

Vir2Drug: a drug repurposing framework based on protein similarities between pathogens
por: Minadakis, George, et al.
Publicado: (2022)

A universal framework for single-cell multi-omics data integration with graph convolutional networks
por: Gao, Hongli, et al.
Publicado: (2023)

PPMS: A framework to Profile Primary MicroRNAs from Single-cell RNA-sequencing datasets
por: Ji, Jiahui, et al.
Publicado: (2022)

HiC1Dmetrics: framework to extract various one-dimensional features from chromosome structure data
por: Wang, Jiankang, et al.
Publicado: (2021)

Sincast: a computational framework to predict cell identities in single-cell transcriptomes using bulk atlases as references
por: Deng, Yidi, et al.
Publicado: (2022)

RBP-TSTL is a two-stage transfer learning framework for genome-scale prediction of RNA-binding proteins
por: Peng, Xinxin, et al.
Publicado: (2022)

Ultraliser: a framework for creating multiscale, high-fidelity and geometrically realistic 3D models for in silico neuroscience
por: Abdellah, Marwan, et al.
Publicado: (2022)

DLRAPom: a hybrid pipeline of Optimized XGBoost-guided integrative multiomics analysis for identifying targetable disease-related lncRNA–miRNA–mRNA regulatory axes
por: Shen, Chen, et al.
Publicado: (2022)

OPUS-Rota4: a gradient-based protein side-chain modeling framework assisted by deep learning-based predictors
por: Xu, Gang, et al.
Publicado: (2021)

COIMMR: a computational framework to reveal the contribution of herbal ingredients against human cancer via immune microenvironment and metabolic reprogramming
por: Tian, Saisai, et al.
Publicado: (2023)

Toward a gold standard for benchmarking gene set enrichment analysis
por: Geistlinger, Ludwig, et al.
Publicado: (2020)

Pleuritic Chest Pain; Where Should We Search for?
por: Gharib, Behdad, et al.
Publicado: (2011)

A young man with multiple joint pains and fever: A case with the importance of accurate history taking
por: Sonoda, Kento, et al.
Publicado: (2017)

A 16-year odyssey of cardiac sarcoid masquerading as idiopathic premature ventricular contractions and then arrhythmogenic cardiomyopathy
por: Nakamura, Tomofumi, et al.
Publicado: (2018)

Bundle branch reentry with His dissociation—The His bundle: Bystander or participant?
por: Nageh, Maged F., et al.
Publicado: (2018)

Intermittent loss of capture in a His bundle pacemaker: What is the cause?
por: Padala, Santosh K., et al.
Publicado: (2017)

Impact of a novel algorithm designed to reduce T-wave oversensing with the subcutaneous defibrillator in a patient with type I Brugada electrocardiogram
por: Boveda, Serge, et al.
Publicado: (2017)

Pitfalls of pacemaker detection of ventricular high-rate events
por: Mansour, Fadi, et al.
Publicado: (2018)

Beauty and the beat: A complicated case of multifocal ectopic Purkinje-related premature contractions
por: ter Bekke, Rachel M.A., et al.
Publicado: (2018)

Successful transseptal puncture and cryoballoon ablation of symptomatic paroxysmal atrial fibrillation via jugular access in a patient with bilateral thrombotic femoral vein occlusion
por: Kox, Thomas, et al.
Publicado: (2019)

Cardiac implantable electronic device malfunction after deceleration injury without obvious chest trauma
por: Barakat, Amr F., et al.
Publicado: (2019)

Clinical problem solving: Maneuvering around a narrow complex tachycardia in a patient with Mustard repair for transposition of the great arteries
por: Jackson, Nicholas, et al.
Publicado: (2016)

Parasternal intercostal approach as an alternative to subxiphoid approach for epicardial catheter ablation: A case report
por: Miyamoto, Koji, et al.
Publicado: (2015)

An unusual ICD shock: What is the mechanism?
por: Gopinathannair, Rakesh, et al.
Publicado: (2015)

Wide complex tachycardia in a patient with pre-excitation: What is the mechanism?
por: Yeo, Colin, et al.
Publicado: (2017)

Tachycardia-induced cardiomyopathy long after a pacemaker implantation for the treatment of unusual 2:1 atrioventricular block: What is the mechanism?
por: Sairaku, Akinori, et al.
Publicado: (2015)

All that glitters is not gold
por: Mizumoto, Junki, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_pb6qgh4bovgpj4887k18po37o5