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Tensor methods in data analysis of chromatography/mass spectroscopy-based plant metabolomics

Plant metabolomics is an important research area in plant science. Chemometrics is a useful tool for plant metabolomic data analysis and processing. Among them, high-order chemometrics represented by tensor modeling provides a new and promising technical method for the analysis of complex multi-way...

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Autores principales: Guo, Lili, Yu, Huiwen, Li, Yuan, Zhang, Chenxi, Kharbach, Mourad
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10662285/
https://www.ncbi.nlm.nih.gov/pubmed/37990220
http://dx.doi.org/10.1186/s13007-023-01105-y
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author Guo, Lili
Yu, Huiwen
Li, Yuan
Zhang, Chenxi
Kharbach, Mourad
author_facet Guo, Lili
Yu, Huiwen
Li, Yuan
Zhang, Chenxi
Kharbach, Mourad
author_sort Guo, Lili
collection PubMed
description Plant metabolomics is an important research area in plant science. Chemometrics is a useful tool for plant metabolomic data analysis and processing. Among them, high-order chemometrics represented by tensor modeling provides a new and promising technical method for the analysis of complex multi-way plant metabolomics data. This paper systematically reviews different tensor methods widely applied to the analysis of complex plant metabolomic data. The advantages and disadvantages as well as the latest methodological advances of tensor models are reviewed and summarized. At the same time, application of different tensor methods in solving plant science problems are also reviewed and discussed. The reviewed applications of tensor methods in plant metabolomics cover a wide range of important plant science topics including plant gene mutation and phenotype, plant disease and resistance, plant pharmacology and nutrition analysis, and plant products ingredient characterization and quality evaluation. It is evident from the review that tensor methods significantly promote the automated and intelligent process of plant metabolomics analysis and profoundly affect the paradigm of plant science research. To the best of our knowledge, this is the first review to systematically summarize the tensor analysis methods in plant metabolomic data analysis.
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spelling pubmed-106622852023-11-21 Tensor methods in data analysis of chromatography/mass spectroscopy-based plant metabolomics Guo, Lili Yu, Huiwen Li, Yuan Zhang, Chenxi Kharbach, Mourad Plant Methods Review Plant metabolomics is an important research area in plant science. Chemometrics is a useful tool for plant metabolomic data analysis and processing. Among them, high-order chemometrics represented by tensor modeling provides a new and promising technical method for the analysis of complex multi-way plant metabolomics data. This paper systematically reviews different tensor methods widely applied to the analysis of complex plant metabolomic data. The advantages and disadvantages as well as the latest methodological advances of tensor models are reviewed and summarized. At the same time, application of different tensor methods in solving plant science problems are also reviewed and discussed. The reviewed applications of tensor methods in plant metabolomics cover a wide range of important plant science topics including plant gene mutation and phenotype, plant disease and resistance, plant pharmacology and nutrition analysis, and plant products ingredient characterization and quality evaluation. It is evident from the review that tensor methods significantly promote the automated and intelligent process of plant metabolomics analysis and profoundly affect the paradigm of plant science research. To the best of our knowledge, this is the first review to systematically summarize the tensor analysis methods in plant metabolomic data analysis. BioMed Central 2023-11-21 /pmc/articles/PMC10662285/ /pubmed/37990220 http://dx.doi.org/10.1186/s13007-023-01105-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Review
Guo, Lili
Yu, Huiwen
Li, Yuan
Zhang, Chenxi
Kharbach, Mourad
Tensor methods in data analysis of chromatography/mass spectroscopy-based plant metabolomics
title Tensor methods in data analysis of chromatography/mass spectroscopy-based plant metabolomics
title_full Tensor methods in data analysis of chromatography/mass spectroscopy-based plant metabolomics
title_fullStr Tensor methods in data analysis of chromatography/mass spectroscopy-based plant metabolomics
title_full_unstemmed Tensor methods in data analysis of chromatography/mass spectroscopy-based plant metabolomics
title_short Tensor methods in data analysis of chromatography/mass spectroscopy-based plant metabolomics
title_sort tensor methods in data analysis of chromatography/mass spectroscopy-based plant metabolomics
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10662285/
https://www.ncbi.nlm.nih.gov/pubmed/37990220
http://dx.doi.org/10.1186/s13007-023-01105-y
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