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Genomic data resources of the Brain Somatic Mosaicism Network for neuropsychiatric diseases

Somatic mosaicism is defined as an occurrence of two or more populations of cells having genomic sequences differing at given loci in an individual who is derived from a single zygote. It is a characteristic of multicellular organisms that plays a crucial role in normal development and disease. To s...

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Autores principales: Garrison, McKinzie A., Jang, Yeongjun, Bae, Taejeong, Cherskov, Adriana, Emery, Sarah B., Fasching, Liana, Jones, Attila, Moldovan, John B., Molitor, Cindy, Pochareddy, Sirisha, Peters, Mette A., Shin, Joo Heon, Wang, Yifan, Yang, Xiaoxu, Akbarian, Schahram, Chess, Andrew, Gage, Fred H., Gleeson, Joseph G., Kidd, Jeffrey M., McConnell, Michael, Mills, Ryan E., Moran, John V., Park, Peter J., Sestan, Nenad, Urban, Alexander E., Vaccarino, Flora M., Walsh, Christopher A., Weinberger, Daniel R., Wheelan, Sarah J., Abyzov, Alexej
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10662356/
https://www.ncbi.nlm.nih.gov/pubmed/37985666
http://dx.doi.org/10.1038/s41597-023-02645-7
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author Garrison, McKinzie A.
Jang, Yeongjun
Bae, Taejeong
Cherskov, Adriana
Emery, Sarah B.
Fasching, Liana
Jones, Attila
Moldovan, John B.
Molitor, Cindy
Pochareddy, Sirisha
Peters, Mette A.
Shin, Joo Heon
Wang, Yifan
Yang, Xiaoxu
Akbarian, Schahram
Chess, Andrew
Gage, Fred H.
Gleeson, Joseph G.
Kidd, Jeffrey M.
McConnell, Michael
Mills, Ryan E.
Moran, John V.
Park, Peter J.
Sestan, Nenad
Urban, Alexander E.
Vaccarino, Flora M.
Walsh, Christopher A.
Weinberger, Daniel R.
Wheelan, Sarah J.
Abyzov, Alexej
author_facet Garrison, McKinzie A.
Jang, Yeongjun
Bae, Taejeong
Cherskov, Adriana
Emery, Sarah B.
Fasching, Liana
Jones, Attila
Moldovan, John B.
Molitor, Cindy
Pochareddy, Sirisha
Peters, Mette A.
Shin, Joo Heon
Wang, Yifan
Yang, Xiaoxu
Akbarian, Schahram
Chess, Andrew
Gage, Fred H.
Gleeson, Joseph G.
Kidd, Jeffrey M.
McConnell, Michael
Mills, Ryan E.
Moran, John V.
Park, Peter J.
Sestan, Nenad
Urban, Alexander E.
Vaccarino, Flora M.
Walsh, Christopher A.
Weinberger, Daniel R.
Wheelan, Sarah J.
Abyzov, Alexej
author_sort Garrison, McKinzie A.
collection PubMed
description Somatic mosaicism is defined as an occurrence of two or more populations of cells having genomic sequences differing at given loci in an individual who is derived from a single zygote. It is a characteristic of multicellular organisms that plays a crucial role in normal development and disease. To study the nature and extent of somatic mosaicism in autism spectrum disorder, bipolar disorder, focal cortical dysplasia, schizophrenia, and Tourette syndrome, a multi-institutional consortium called the Brain Somatic Mosaicism Network (BSMN) was formed through the National Institute of Mental Health (NIMH). In addition to genomic data of affected and neurotypical brains, the BSMN also developed and validated a best practices somatic single nucleotide variant calling workflow through the analysis of reference brain tissue. These resources, which include >400 terabytes of data from 1087 subjects, are now available to the research community via the NIMH Data Archive (NDA) and are described here.
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spelling pubmed-106623562023-11-20 Genomic data resources of the Brain Somatic Mosaicism Network for neuropsychiatric diseases Garrison, McKinzie A. Jang, Yeongjun Bae, Taejeong Cherskov, Adriana Emery, Sarah B. Fasching, Liana Jones, Attila Moldovan, John B. Molitor, Cindy Pochareddy, Sirisha Peters, Mette A. Shin, Joo Heon Wang, Yifan Yang, Xiaoxu Akbarian, Schahram Chess, Andrew Gage, Fred H. Gleeson, Joseph G. Kidd, Jeffrey M. McConnell, Michael Mills, Ryan E. Moran, John V. Park, Peter J. Sestan, Nenad Urban, Alexander E. Vaccarino, Flora M. Walsh, Christopher A. Weinberger, Daniel R. Wheelan, Sarah J. Abyzov, Alexej Sci Data Data Descriptor Somatic mosaicism is defined as an occurrence of two or more populations of cells having genomic sequences differing at given loci in an individual who is derived from a single zygote. It is a characteristic of multicellular organisms that plays a crucial role in normal development and disease. To study the nature and extent of somatic mosaicism in autism spectrum disorder, bipolar disorder, focal cortical dysplasia, schizophrenia, and Tourette syndrome, a multi-institutional consortium called the Brain Somatic Mosaicism Network (BSMN) was formed through the National Institute of Mental Health (NIMH). In addition to genomic data of affected and neurotypical brains, the BSMN also developed and validated a best practices somatic single nucleotide variant calling workflow through the analysis of reference brain tissue. These resources, which include >400 terabytes of data from 1087 subjects, are now available to the research community via the NIMH Data Archive (NDA) and are described here. Nature Publishing Group UK 2023-11-20 /pmc/articles/PMC10662356/ /pubmed/37985666 http://dx.doi.org/10.1038/s41597-023-02645-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Garrison, McKinzie A.
Jang, Yeongjun
Bae, Taejeong
Cherskov, Adriana
Emery, Sarah B.
Fasching, Liana
Jones, Attila
Moldovan, John B.
Molitor, Cindy
Pochareddy, Sirisha
Peters, Mette A.
Shin, Joo Heon
Wang, Yifan
Yang, Xiaoxu
Akbarian, Schahram
Chess, Andrew
Gage, Fred H.
Gleeson, Joseph G.
Kidd, Jeffrey M.
McConnell, Michael
Mills, Ryan E.
Moran, John V.
Park, Peter J.
Sestan, Nenad
Urban, Alexander E.
Vaccarino, Flora M.
Walsh, Christopher A.
Weinberger, Daniel R.
Wheelan, Sarah J.
Abyzov, Alexej
Genomic data resources of the Brain Somatic Mosaicism Network for neuropsychiatric diseases
title Genomic data resources of the Brain Somatic Mosaicism Network for neuropsychiatric diseases
title_full Genomic data resources of the Brain Somatic Mosaicism Network for neuropsychiatric diseases
title_fullStr Genomic data resources of the Brain Somatic Mosaicism Network for neuropsychiatric diseases
title_full_unstemmed Genomic data resources of the Brain Somatic Mosaicism Network for neuropsychiatric diseases
title_short Genomic data resources of the Brain Somatic Mosaicism Network for neuropsychiatric diseases
title_sort genomic data resources of the brain somatic mosaicism network for neuropsychiatric diseases
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10662356/
https://www.ncbi.nlm.nih.gov/pubmed/37985666
http://dx.doi.org/10.1038/s41597-023-02645-7
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