Transcriptomic monitoring of Douglas-fir heartwood formation

OBJECTIVES: Molecular cues linked to heartwood formation open new (complementary) perspectives to genetic breeding programs of Douglas-fir, a tree species largely cultivated in Europe for the natural durability and civil engineering properties of its wood. DATA DESCRIPTION: RNAs from a single genoty...

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Autores principales: Delourme, Didier, Brémaud, Laure, Plazanet, Idelette, Pélissier, Patrick, Label, Philippe, Boizot, Nathalie, Breton, Christian, Durand, Stéphanie, Costa, Guy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Data Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10662504/
https://www.ncbi.nlm.nih.gov/pubmed/37986039
http://dx.doi.org/10.1186/s12863-023-01172-z
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author Delourme, Didier
Brémaud, Laure
Plazanet, Idelette
Pélissier, Patrick
Label, Philippe
Boizot, Nathalie
Breton, Christian
Durand, Stéphanie
Costa, Guy
author_facet Delourme, Didier
Brémaud, Laure
Plazanet, Idelette
Pélissier, Patrick
Label, Philippe
Boizot, Nathalie
Breton, Christian
Durand, Stéphanie
Costa, Guy
author_sort Delourme, Didier
collection PubMed
description OBJECTIVES: Molecular cues linked to heartwood formation open new (complementary) perspectives to genetic breeding programs of Douglas-fir, a tree species largely cultivated in Europe for the natural durability and civil engineering properties of its wood. DATA DESCRIPTION: RNAs from a single genotype of Douglas-fir, extracted from three distinct wood zones (outer sapwood, inner sapwood and transition zone) at four vegetative seasons to generate an extensive RNA-seq dataset used to apprehend the in-wood dynamic and seasonality of heartwood formation in this hardwood model species. Previously published data collected on somatic embryos of the same genotype could be merged with the present dataset to upgrade grade the Douglas-fir reference transcriptome.
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spelling pubmed-106625042023-11-20 Transcriptomic monitoring of Douglas-fir heartwood formation Delourme, Didier Brémaud, Laure Plazanet, Idelette Pélissier, Patrick Label, Philippe Boizot, Nathalie Breton, Christian Durand, Stéphanie Costa, Guy BMC Genom Data Data Note OBJECTIVES: Molecular cues linked to heartwood formation open new (complementary) perspectives to genetic breeding programs of Douglas-fir, a tree species largely cultivated in Europe for the natural durability and civil engineering properties of its wood. DATA DESCRIPTION: RNAs from a single genotype of Douglas-fir, extracted from three distinct wood zones (outer sapwood, inner sapwood and transition zone) at four vegetative seasons to generate an extensive RNA-seq dataset used to apprehend the in-wood dynamic and seasonality of heartwood formation in this hardwood model species. Previously published data collected on somatic embryos of the same genotype could be merged with the present dataset to upgrade grade the Douglas-fir reference transcriptome. BioMed Central 2023-11-20 /pmc/articles/PMC10662504/ /pubmed/37986039 http://dx.doi.org/10.1186/s12863-023-01172-z Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Data Note
Delourme, Didier
Brémaud, Laure
Plazanet, Idelette
Pélissier, Patrick
Label, Philippe
Boizot, Nathalie
Breton, Christian
Durand, Stéphanie
Costa, Guy
Transcriptomic monitoring of Douglas-fir heartwood formation
title Transcriptomic monitoring of Douglas-fir heartwood formation
title_full Transcriptomic monitoring of Douglas-fir heartwood formation
title_fullStr Transcriptomic monitoring of Douglas-fir heartwood formation
title_full_unstemmed Transcriptomic monitoring of Douglas-fir heartwood formation
title_short Transcriptomic monitoring of Douglas-fir heartwood formation
title_sort transcriptomic monitoring of douglas-fir heartwood formation
topic Data Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10662504/
https://www.ncbi.nlm.nih.gov/pubmed/37986039
http://dx.doi.org/10.1186/s12863-023-01172-z
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