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A Multiclass Radiomics Method–Based WHO Severity Scale for Improving COVID-19 Patient Assessment and Disease Characterization From CT Scans
OBJECTIVES: The aim of this study was to evaluate the severity of COVID-19 patients' disease by comparing a multiclass lung lesion model to a single-class lung lesion model and radiologists' assessments in chest computed tomography scans. MATERIALS AND METHODS: The proposed method, AssessN...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Lippincott Williams & Wilkins
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10662611/ https://www.ncbi.nlm.nih.gov/pubmed/37493348 http://dx.doi.org/10.1097/RLI.0000000000001005 |
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author | Henao, John Anderson Garcia Depotter, Arno Bower, Danielle V. Bajercius, Herkus Todorova, Plamena Teodosieva Saint-James, Hugo de Mortanges, Aurélie Pahud Barroso, Maria Cecilia He, Jianchun Yang, Junlin You, Chenyu Staib, Lawrence H. Gange, Christopher Ledda, Roberta Eufrasia Caminiti, Caterina Silva, Mario Cortopassi, Isabel Oliva Dela Cruz, Charles S. Hautz, Wolf Bonel, Harald M. Sverzellati, Nicola Duncan, James S. Reyes, Mauricio Poellinger, Alexander |
author_facet | Henao, John Anderson Garcia Depotter, Arno Bower, Danielle V. Bajercius, Herkus Todorova, Plamena Teodosieva Saint-James, Hugo de Mortanges, Aurélie Pahud Barroso, Maria Cecilia He, Jianchun Yang, Junlin You, Chenyu Staib, Lawrence H. Gange, Christopher Ledda, Roberta Eufrasia Caminiti, Caterina Silva, Mario Cortopassi, Isabel Oliva Dela Cruz, Charles S. Hautz, Wolf Bonel, Harald M. Sverzellati, Nicola Duncan, James S. Reyes, Mauricio Poellinger, Alexander |
author_sort | Henao, John Anderson Garcia |
collection | PubMed |
description | OBJECTIVES: The aim of this study was to evaluate the severity of COVID-19 patients' disease by comparing a multiclass lung lesion model to a single-class lung lesion model and radiologists' assessments in chest computed tomography scans. MATERIALS AND METHODS: The proposed method, AssessNet-19, was developed in 2 stages in this retrospective study. Four COVID-19–induced tissue lesions were manually segmented to train a 2D-U-Net network for a multiclass segmentation task followed by extensive extraction of radiomic features from the lung lesions. LASSO regression was used to reduce the feature set, and the XGBoost algorithm was trained to classify disease severity based on the World Health Organization Clinical Progression Scale. The model was evaluated using 2 multicenter cohorts: a development cohort of 145 COVID-19–positive patients from 3 centers to train and test the severity prediction model using manually segmented lung lesions. In addition, an evaluation set of 90 COVID-19–positive patients was collected from 2 centers to evaluate AssessNet-19 in a fully automated fashion. RESULTS: AssessNet-19 achieved an F1-score of 0.76 ± 0.02 for severity classification in the evaluation set, which was superior to the 3 expert thoracic radiologists (F1 = 0.63 ± 0.02) and the single-class lesion segmentation model (F1 = 0.64 ± 0.02). In addition, AssessNet-19 automated multiclass lesion segmentation obtained a mean Dice score of 0.70 for ground-glass opacity, 0.68 for consolidation, 0.65 for pleural effusion, and 0.30 for band-like structures compared with ground truth. Moreover, it achieved a high agreement with radiologists for quantifying disease extent with Cohen κ of 0.94, 0.92, and 0.95. CONCLUSIONS: A novel artificial intelligence multiclass radiomics model including 4 lung lesions to assess disease severity based on the World Health Organization Clinical Progression Scale more accurately determines the severity of COVID-19 patients than a single-class model and radiologists' assessment. |
format | Online Article Text |
id | pubmed-10662611 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Lippincott Williams & Wilkins |
record_format | MEDLINE/PubMed |
spelling | pubmed-106626112023-11-21 A Multiclass Radiomics Method–Based WHO Severity Scale for Improving COVID-19 Patient Assessment and Disease Characterization From CT Scans Henao, John Anderson Garcia Depotter, Arno Bower, Danielle V. Bajercius, Herkus Todorova, Plamena Teodosieva Saint-James, Hugo de Mortanges, Aurélie Pahud Barroso, Maria Cecilia He, Jianchun Yang, Junlin You, Chenyu Staib, Lawrence H. Gange, Christopher Ledda, Roberta Eufrasia Caminiti, Caterina Silva, Mario Cortopassi, Isabel Oliva Dela Cruz, Charles S. Hautz, Wolf Bonel, Harald M. Sverzellati, Nicola Duncan, James S. Reyes, Mauricio Poellinger, Alexander Invest Radiol Original Article OBJECTIVES: The aim of this study was to evaluate the severity of COVID-19 patients' disease by comparing a multiclass lung lesion model to a single-class lung lesion model and radiologists' assessments in chest computed tomography scans. MATERIALS AND METHODS: The proposed method, AssessNet-19, was developed in 2 stages in this retrospective study. Four COVID-19–induced tissue lesions were manually segmented to train a 2D-U-Net network for a multiclass segmentation task followed by extensive extraction of radiomic features from the lung lesions. LASSO regression was used to reduce the feature set, and the XGBoost algorithm was trained to classify disease severity based on the World Health Organization Clinical Progression Scale. The model was evaluated using 2 multicenter cohorts: a development cohort of 145 COVID-19–positive patients from 3 centers to train and test the severity prediction model using manually segmented lung lesions. In addition, an evaluation set of 90 COVID-19–positive patients was collected from 2 centers to evaluate AssessNet-19 in a fully automated fashion. RESULTS: AssessNet-19 achieved an F1-score of 0.76 ± 0.02 for severity classification in the evaluation set, which was superior to the 3 expert thoracic radiologists (F1 = 0.63 ± 0.02) and the single-class lesion segmentation model (F1 = 0.64 ± 0.02). In addition, AssessNet-19 automated multiclass lesion segmentation obtained a mean Dice score of 0.70 for ground-glass opacity, 0.68 for consolidation, 0.65 for pleural effusion, and 0.30 for band-like structures compared with ground truth. Moreover, it achieved a high agreement with radiologists for quantifying disease extent with Cohen κ of 0.94, 0.92, and 0.95. CONCLUSIONS: A novel artificial intelligence multiclass radiomics model including 4 lung lesions to assess disease severity based on the World Health Organization Clinical Progression Scale more accurately determines the severity of COVID-19 patients than a single-class model and radiologists' assessment. Lippincott Williams & Wilkins 2023-12 2023-07-27 /pmc/articles/PMC10662611/ /pubmed/37493348 http://dx.doi.org/10.1097/RLI.0000000000001005 Text en Copyright © 2023 The Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-Non Commercial-No Derivatives License 4.0 (CCBY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) , where it is permissible to download and share the work provided it is properly cited. The work cannot be changed in any way or used commercially without permission from the journal. |
spellingShingle | Original Article Henao, John Anderson Garcia Depotter, Arno Bower, Danielle V. Bajercius, Herkus Todorova, Plamena Teodosieva Saint-James, Hugo de Mortanges, Aurélie Pahud Barroso, Maria Cecilia He, Jianchun Yang, Junlin You, Chenyu Staib, Lawrence H. Gange, Christopher Ledda, Roberta Eufrasia Caminiti, Caterina Silva, Mario Cortopassi, Isabel Oliva Dela Cruz, Charles S. Hautz, Wolf Bonel, Harald M. Sverzellati, Nicola Duncan, James S. Reyes, Mauricio Poellinger, Alexander A Multiclass Radiomics Method–Based WHO Severity Scale for Improving COVID-19 Patient Assessment and Disease Characterization From CT Scans |
title | A Multiclass Radiomics Method–Based WHO Severity Scale for Improving COVID-19 Patient Assessment and Disease Characterization From CT Scans |
title_full | A Multiclass Radiomics Method–Based WHO Severity Scale for Improving COVID-19 Patient Assessment and Disease Characterization From CT Scans |
title_fullStr | A Multiclass Radiomics Method–Based WHO Severity Scale for Improving COVID-19 Patient Assessment and Disease Characterization From CT Scans |
title_full_unstemmed | A Multiclass Radiomics Method–Based WHO Severity Scale for Improving COVID-19 Patient Assessment and Disease Characterization From CT Scans |
title_short | A Multiclass Radiomics Method–Based WHO Severity Scale for Improving COVID-19 Patient Assessment and Disease Characterization From CT Scans |
title_sort | multiclass radiomics method–based who severity scale for improving covid-19 patient assessment and disease characterization from ct scans |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10662611/ https://www.ncbi.nlm.nih.gov/pubmed/37493348 http://dx.doi.org/10.1097/RLI.0000000000001005 |
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