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Genetic analysis of potential biomarkers and therapeutic targets associated with ferroptosis from bronchopulmonary dysplasia
Ferroptosis is a recently identified form of cell death that is distinct from the conventional modes such as necrosis, apoptosis, and autophagy. Its role in bronchopulmonary dysplasia (BPD) remains inadequately understood. To address this gap, we obtained BPD-related RNA-seq data and ferroptosis-rel...
Autores principales: | , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Lippincott Williams & Wilkins
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10662800/ https://www.ncbi.nlm.nih.gov/pubmed/37478211 http://dx.doi.org/10.1097/MD.0000000000034371 |
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author | Ma, Xiaoxue Tao, Ziyu Chen, Leiming Duan, Shaozhi Zhou, Guoping Ma, Yunxia Xiong, Zhenqin Zhu, Lan Ma, Xuejiao Mao, Yan Hu, Yifang Zeng, Ni Wang, Jimei Bao, Yunlei Luo, Fei Wu, Chuyan Jiang, Feng |
author_facet | Ma, Xiaoxue Tao, Ziyu Chen, Leiming Duan, Shaozhi Zhou, Guoping Ma, Yunxia Xiong, Zhenqin Zhu, Lan Ma, Xuejiao Mao, Yan Hu, Yifang Zeng, Ni Wang, Jimei Bao, Yunlei Luo, Fei Wu, Chuyan Jiang, Feng |
author_sort | Ma, Xiaoxue |
collection | PubMed |
description | Ferroptosis is a recently identified form of cell death that is distinct from the conventional modes such as necrosis, apoptosis, and autophagy. Its role in bronchopulmonary dysplasia (BPD) remains inadequately understood. To address this gap, we obtained BPD-related RNA-seq data and ferroptosis-related genes (FRGs) from the GEO database and FerrDb, respectively. A total of 171 BPD-related differentially expressed ferroptosis-related genes (DE-FRGs) linked to the regulation of autophagy and immune response were identified. Least absolute shrinkage and selection operator and SVM-RFE algorithms identified 23 and 14 genes, respectively, as marker genes. The intersection of these 2 sets yielded 9 genes (ALOX12B, NR1D1, LGMN, IFNA21, MEG3, AKR1C1, CA9, ABCC5, and GALNT14) with acceptable diagnostic capacity. The results of the functional enrichment analysis indicated that these identified marker genes may be involved in the pathogenesis of BPD through the regulation of immune response, cell cycle, and BPD-related pathways. Additionally, we identified 29 drugs that target 5 of the marker genes, which could have potential therapeutic implications. The ceRNA network we constructed revealed a complex regulatory network based on the marker genes, further highlighting their potential roles in BPD. Our findings offer diagnostic potential and insight into the mechanism underlying BPD. Further research is needed to assess its clinical utility. |
format | Online Article Text |
id | pubmed-10662800 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Lippincott Williams & Wilkins |
record_format | MEDLINE/PubMed |
spelling | pubmed-106628002023-07-21 Genetic analysis of potential biomarkers and therapeutic targets associated with ferroptosis from bronchopulmonary dysplasia Ma, Xiaoxue Tao, Ziyu Chen, Leiming Duan, Shaozhi Zhou, Guoping Ma, Yunxia Xiong, Zhenqin Zhu, Lan Ma, Xuejiao Mao, Yan Hu, Yifang Zeng, Ni Wang, Jimei Bao, Yunlei Luo, Fei Wu, Chuyan Jiang, Feng Medicine (Baltimore) 6200 Ferroptosis is a recently identified form of cell death that is distinct from the conventional modes such as necrosis, apoptosis, and autophagy. Its role in bronchopulmonary dysplasia (BPD) remains inadequately understood. To address this gap, we obtained BPD-related RNA-seq data and ferroptosis-related genes (FRGs) from the GEO database and FerrDb, respectively. A total of 171 BPD-related differentially expressed ferroptosis-related genes (DE-FRGs) linked to the regulation of autophagy and immune response were identified. Least absolute shrinkage and selection operator and SVM-RFE algorithms identified 23 and 14 genes, respectively, as marker genes. The intersection of these 2 sets yielded 9 genes (ALOX12B, NR1D1, LGMN, IFNA21, MEG3, AKR1C1, CA9, ABCC5, and GALNT14) with acceptable diagnostic capacity. The results of the functional enrichment analysis indicated that these identified marker genes may be involved in the pathogenesis of BPD through the regulation of immune response, cell cycle, and BPD-related pathways. Additionally, we identified 29 drugs that target 5 of the marker genes, which could have potential therapeutic implications. The ceRNA network we constructed revealed a complex regulatory network based on the marker genes, further highlighting their potential roles in BPD. Our findings offer diagnostic potential and insight into the mechanism underlying BPD. Further research is needed to assess its clinical utility. Lippincott Williams & Wilkins 2023-07-21 /pmc/articles/PMC10662800/ /pubmed/37478211 http://dx.doi.org/10.1097/MD.0000000000034371 Text en Copyright © 2023 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License 4.0 (CCBY) (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | 6200 Ma, Xiaoxue Tao, Ziyu Chen, Leiming Duan, Shaozhi Zhou, Guoping Ma, Yunxia Xiong, Zhenqin Zhu, Lan Ma, Xuejiao Mao, Yan Hu, Yifang Zeng, Ni Wang, Jimei Bao, Yunlei Luo, Fei Wu, Chuyan Jiang, Feng Genetic analysis of potential biomarkers and therapeutic targets associated with ferroptosis from bronchopulmonary dysplasia |
title | Genetic analysis of potential biomarkers and therapeutic targets associated with ferroptosis from bronchopulmonary dysplasia |
title_full | Genetic analysis of potential biomarkers and therapeutic targets associated with ferroptosis from bronchopulmonary dysplasia |
title_fullStr | Genetic analysis of potential biomarkers and therapeutic targets associated with ferroptosis from bronchopulmonary dysplasia |
title_full_unstemmed | Genetic analysis of potential biomarkers and therapeutic targets associated with ferroptosis from bronchopulmonary dysplasia |
title_short | Genetic analysis of potential biomarkers and therapeutic targets associated with ferroptosis from bronchopulmonary dysplasia |
title_sort | genetic analysis of potential biomarkers and therapeutic targets associated with ferroptosis from bronchopulmonary dysplasia |
topic | 6200 |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10662800/ https://www.ncbi.nlm.nih.gov/pubmed/37478211 http://dx.doi.org/10.1097/MD.0000000000034371 |
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