Cargando…
Construction and evaluation of a novel prognostic risk model of aging-related genes in bladder cancer
BACKGROUND: Bladder cancer (BLCA) is the most common malignancy of the urinary system. Muscle-invasive bladder cancer (MIBC), which constitutes approximately 25% of all BLCA cases, is characterized by frequent recurrence and early onset of metastasis. Bladder cancer most commonly occurs in elderly p...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Lippincott Williams & Wilkins
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10662852/ https://www.ncbi.nlm.nih.gov/pubmed/37994343 http://dx.doi.org/10.1097/CU9.0000000000000218 |
_version_ | 1785148608592478208 |
---|---|
author | Wang, Delin Ning, Hao Wu, Haihu Song, Yufeng Chu, Yaru Liu, Feifan Zhao, Zhenlin Wu, Fei Lyu, Jiaju |
author_facet | Wang, Delin Ning, Hao Wu, Haihu Song, Yufeng Chu, Yaru Liu, Feifan Zhao, Zhenlin Wu, Fei Lyu, Jiaju |
author_sort | Wang, Delin |
collection | PubMed |
description | BACKGROUND: Bladder cancer (BLCA) is the most common malignancy of the urinary system. Muscle-invasive bladder cancer (MIBC), which constitutes approximately 25% of all BLCA cases, is characterized by frequent recurrence and early onset of metastasis. Bladder cancer most commonly occurs in elderly patients and is significantly associated with aging. However, the prognostic value of age-related genes in BLCA, especially in MIBC, remains unclear. MATERIALS AND METHODS: Training and testing sets were obtained from The Cancer Genome Atlas BLCA project. Differentially expressed genes between BLCA and normal samples intersected with human aging-related genes. Univariate Cox regression and least absolute shrinkage and selection operator regression analyses were used to identify prognostic aging-related signatures, followed by the construction of a risk score model and nomogram. Kaplan-Meier and receiver operating characteristic analyses were conducted to assess the predictive power. An independent BLCA cohort of 165 samples was included for external validation. The CIBERSORT algorithm was used to explore the characteristics of the immune microenvironment. RESULTS: Seven genes (IGF1, NGF, GCLM, PYCR1, EFEMP1, APOC3, and IFNB1) were identified by Cox and least absolute shrinkage and selection operator analyses. After combining the gene signature with the clinical parameters of patients with BLCA, a risk-prognosis model and nomogram were constructed and validated with the testing set. Bladder cancer cases with high 7-gene signature scores (high-risk group) and low scores (low-risk group) showed distinct prognoses. Furthermore, 7 types of immune cells were significantly altered between the low- and high-risk groups. CONCLUSIONS: Collectively, our data provide a 7-gene signature that serves as a potential biomarker for BLCA, especially MIBC. Moreover, this 7-gene signature highlights the role of the tumor immune microenvironment in prognosis and thus might be related to the response to anti-programmed cell death protein 1–based immunotherapy. |
format | Online Article Text |
id | pubmed-10662852 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Lippincott Williams & Wilkins |
record_format | MEDLINE/PubMed |
spelling | pubmed-106628522023-12-01 Construction and evaluation of a novel prognostic risk model of aging-related genes in bladder cancer Wang, Delin Ning, Hao Wu, Haihu Song, Yufeng Chu, Yaru Liu, Feifan Zhao, Zhenlin Wu, Fei Lyu, Jiaju Curr Urol Special Topic - Advances in Bladder Cancer Therapy BACKGROUND: Bladder cancer (BLCA) is the most common malignancy of the urinary system. Muscle-invasive bladder cancer (MIBC), which constitutes approximately 25% of all BLCA cases, is characterized by frequent recurrence and early onset of metastasis. Bladder cancer most commonly occurs in elderly patients and is significantly associated with aging. However, the prognostic value of age-related genes in BLCA, especially in MIBC, remains unclear. MATERIALS AND METHODS: Training and testing sets were obtained from The Cancer Genome Atlas BLCA project. Differentially expressed genes between BLCA and normal samples intersected with human aging-related genes. Univariate Cox regression and least absolute shrinkage and selection operator regression analyses were used to identify prognostic aging-related signatures, followed by the construction of a risk score model and nomogram. Kaplan-Meier and receiver operating characteristic analyses were conducted to assess the predictive power. An independent BLCA cohort of 165 samples was included for external validation. The CIBERSORT algorithm was used to explore the characteristics of the immune microenvironment. RESULTS: Seven genes (IGF1, NGF, GCLM, PYCR1, EFEMP1, APOC3, and IFNB1) were identified by Cox and least absolute shrinkage and selection operator analyses. After combining the gene signature with the clinical parameters of patients with BLCA, a risk-prognosis model and nomogram were constructed and validated with the testing set. Bladder cancer cases with high 7-gene signature scores (high-risk group) and low scores (low-risk group) showed distinct prognoses. Furthermore, 7 types of immune cells were significantly altered between the low- and high-risk groups. CONCLUSIONS: Collectively, our data provide a 7-gene signature that serves as a potential biomarker for BLCA, especially MIBC. Moreover, this 7-gene signature highlights the role of the tumor immune microenvironment in prognosis and thus might be related to the response to anti-programmed cell death protein 1–based immunotherapy. Lippincott Williams & Wilkins 2023-12 2023-07-12 /pmc/articles/PMC10662852/ /pubmed/37994343 http://dx.doi.org/10.1097/CU9.0000000000000218 Text en Copyright © 2023 The Authors. Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-Non Commercial-No Derivatives License 4.0 (CCBY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) , where it is permissible to download and share the work provided it is properly cited. The work cannot be changed in any way or used commercially without permission from the journal. |
spellingShingle | Special Topic - Advances in Bladder Cancer Therapy Wang, Delin Ning, Hao Wu, Haihu Song, Yufeng Chu, Yaru Liu, Feifan Zhao, Zhenlin Wu, Fei Lyu, Jiaju Construction and evaluation of a novel prognostic risk model of aging-related genes in bladder cancer |
title | Construction and evaluation of a novel prognostic risk model of aging-related genes in bladder cancer |
title_full | Construction and evaluation of a novel prognostic risk model of aging-related genes in bladder cancer |
title_fullStr | Construction and evaluation of a novel prognostic risk model of aging-related genes in bladder cancer |
title_full_unstemmed | Construction and evaluation of a novel prognostic risk model of aging-related genes in bladder cancer |
title_short | Construction and evaluation of a novel prognostic risk model of aging-related genes in bladder cancer |
title_sort | construction and evaluation of a novel prognostic risk model of aging-related genes in bladder cancer |
topic | Special Topic - Advances in Bladder Cancer Therapy |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10662852/ https://www.ncbi.nlm.nih.gov/pubmed/37994343 http://dx.doi.org/10.1097/CU9.0000000000000218 |
work_keys_str_mv | AT wangdelin constructionandevaluationofanovelprognosticriskmodelofagingrelatedgenesinbladdercancer AT ninghao constructionandevaluationofanovelprognosticriskmodelofagingrelatedgenesinbladdercancer AT wuhaihu constructionandevaluationofanovelprognosticriskmodelofagingrelatedgenesinbladdercancer AT songyufeng constructionandevaluationofanovelprognosticriskmodelofagingrelatedgenesinbladdercancer AT chuyaru constructionandevaluationofanovelprognosticriskmodelofagingrelatedgenesinbladdercancer AT liufeifan constructionandevaluationofanovelprognosticriskmodelofagingrelatedgenesinbladdercancer AT zhaozhenlin constructionandevaluationofanovelprognosticriskmodelofagingrelatedgenesinbladdercancer AT wufei constructionandevaluationofanovelprognosticriskmodelofagingrelatedgenesinbladdercancer AT lyujiaju constructionandevaluationofanovelprognosticriskmodelofagingrelatedgenesinbladdercancer |