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Myr-Arf1 conformational flexibility at the membrane surface sheds light on the interactions with ArfGAP ASAP1

ADP-ribosylation factor 1 (Arf1) interacts with multiple cellular partners and membranes to regulate intracellular traffic, organelle structure and actin dynamics. Defining the dynamic conformational landscape of Arf1 in its active form, when bound to the membrane, is of high functional relevance an...

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Autores principales: Zhang, Yue, Soubias, Olivier, Pant, Shashank, Heinrich, Frank, Vogel, Alexander, Li, Jess, Li, Yifei, Clifton, Luke A., Daum, Sebastian, Bacia, Kirsten, Huster, Daniel, Randazzo, Paul A., Lösche, Mathias, Tajkhorshid, Emad, Byrd, R. Andrew
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10663523/
https://www.ncbi.nlm.nih.gov/pubmed/37989735
http://dx.doi.org/10.1038/s41467-023-43008-5
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author Zhang, Yue
Soubias, Olivier
Pant, Shashank
Heinrich, Frank
Vogel, Alexander
Li, Jess
Li, Yifei
Clifton, Luke A.
Daum, Sebastian
Bacia, Kirsten
Huster, Daniel
Randazzo, Paul A.
Lösche, Mathias
Tajkhorshid, Emad
Byrd, R. Andrew
author_facet Zhang, Yue
Soubias, Olivier
Pant, Shashank
Heinrich, Frank
Vogel, Alexander
Li, Jess
Li, Yifei
Clifton, Luke A.
Daum, Sebastian
Bacia, Kirsten
Huster, Daniel
Randazzo, Paul A.
Lösche, Mathias
Tajkhorshid, Emad
Byrd, R. Andrew
author_sort Zhang, Yue
collection PubMed
description ADP-ribosylation factor 1 (Arf1) interacts with multiple cellular partners and membranes to regulate intracellular traffic, organelle structure and actin dynamics. Defining the dynamic conformational landscape of Arf1 in its active form, when bound to the membrane, is of high functional relevance and key to understanding how Arf1 can alter diverse cellular processes. Through concerted application of nuclear magnetic resonance (NMR), neutron reflectometry (NR) and molecular dynamics (MD) simulations, we show that, while Arf1 is anchored to the membrane through its N-terminal myristoylated amphipathic helix, the G domain explores a large conformational space, existing in a dynamic equilibrium between membrane-associated and membrane-distal conformations. These configurational dynamics expose different interfaces for interaction with effectors. Interaction with the Pleckstrin homology domain of ASAP1, an Arf-GTPase activating protein (ArfGAP), restricts motions of the G domain to lock it in what seems to be a conformation exposing functionally relevant regions.
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spelling pubmed-106635232023-11-21 Myr-Arf1 conformational flexibility at the membrane surface sheds light on the interactions with ArfGAP ASAP1 Zhang, Yue Soubias, Olivier Pant, Shashank Heinrich, Frank Vogel, Alexander Li, Jess Li, Yifei Clifton, Luke A. Daum, Sebastian Bacia, Kirsten Huster, Daniel Randazzo, Paul A. Lösche, Mathias Tajkhorshid, Emad Byrd, R. Andrew Nat Commun Article ADP-ribosylation factor 1 (Arf1) interacts with multiple cellular partners and membranes to regulate intracellular traffic, organelle structure and actin dynamics. Defining the dynamic conformational landscape of Arf1 in its active form, when bound to the membrane, is of high functional relevance and key to understanding how Arf1 can alter diverse cellular processes. Through concerted application of nuclear magnetic resonance (NMR), neutron reflectometry (NR) and molecular dynamics (MD) simulations, we show that, while Arf1 is anchored to the membrane through its N-terminal myristoylated amphipathic helix, the G domain explores a large conformational space, existing in a dynamic equilibrium between membrane-associated and membrane-distal conformations. These configurational dynamics expose different interfaces for interaction with effectors. Interaction with the Pleckstrin homology domain of ASAP1, an Arf-GTPase activating protein (ArfGAP), restricts motions of the G domain to lock it in what seems to be a conformation exposing functionally relevant regions. Nature Publishing Group UK 2023-11-21 /pmc/articles/PMC10663523/ /pubmed/37989735 http://dx.doi.org/10.1038/s41467-023-43008-5 Text en © This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Zhang, Yue
Soubias, Olivier
Pant, Shashank
Heinrich, Frank
Vogel, Alexander
Li, Jess
Li, Yifei
Clifton, Luke A.
Daum, Sebastian
Bacia, Kirsten
Huster, Daniel
Randazzo, Paul A.
Lösche, Mathias
Tajkhorshid, Emad
Byrd, R. Andrew
Myr-Arf1 conformational flexibility at the membrane surface sheds light on the interactions with ArfGAP ASAP1
title Myr-Arf1 conformational flexibility at the membrane surface sheds light on the interactions with ArfGAP ASAP1
title_full Myr-Arf1 conformational flexibility at the membrane surface sheds light on the interactions with ArfGAP ASAP1
title_fullStr Myr-Arf1 conformational flexibility at the membrane surface sheds light on the interactions with ArfGAP ASAP1
title_full_unstemmed Myr-Arf1 conformational flexibility at the membrane surface sheds light on the interactions with ArfGAP ASAP1
title_short Myr-Arf1 conformational flexibility at the membrane surface sheds light on the interactions with ArfGAP ASAP1
title_sort myr-arf1 conformational flexibility at the membrane surface sheds light on the interactions with arfgap asap1
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10663523/
https://www.ncbi.nlm.nih.gov/pubmed/37989735
http://dx.doi.org/10.1038/s41467-023-43008-5
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