Cargando…
From numbers to medical knowledge: harnessing combinatorial data patterns to predict COVID-19 resource needs and distinguish patient subsets
BACKGROUND: The COVID-19 pandemic intensified the use of scarce resources, including extracorporeal membrane oxygenation (ECMO) and mechanical ventilation (MV). The combinatorial features of the immune system may be considered to estimate such needs and facilitate continuous open-ended knowledge dis...
Autores principales: | , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10664024/ https://www.ncbi.nlm.nih.gov/pubmed/38020180 http://dx.doi.org/10.3389/fmed.2023.1240426 |
_version_ | 1785138529668431872 |
---|---|
author | Satashia, Parthkumar H. Franco, Pablo Moreno Rivas, Ariel L. Isha, Shahin Hanson, Abby Narra, Sai Abhishek Singh, Kawaljeet Jenkins, Anna Bhattacharyya, Anirban Guru, Pramod Chaudhary, Sanjay Kiley, Sean Shapiro, Anna Martin, Archer Thomas, Mathew Sareyyupoglu, Basar Libertin, Claudia R. Sanghavi, Devang K. |
author_facet | Satashia, Parthkumar H. Franco, Pablo Moreno Rivas, Ariel L. Isha, Shahin Hanson, Abby Narra, Sai Abhishek Singh, Kawaljeet Jenkins, Anna Bhattacharyya, Anirban Guru, Pramod Chaudhary, Sanjay Kiley, Sean Shapiro, Anna Martin, Archer Thomas, Mathew Sareyyupoglu, Basar Libertin, Claudia R. Sanghavi, Devang K. |
author_sort | Satashia, Parthkumar H. |
collection | PubMed |
description | BACKGROUND: The COVID-19 pandemic intensified the use of scarce resources, including extracorporeal membrane oxygenation (ECMO) and mechanical ventilation (MV). The combinatorial features of the immune system may be considered to estimate such needs and facilitate continuous open-ended knowledge discovery. MATERIALS AND METHODS: Computer-generated distinct data patterns derived from 283 white blood cell counts collected within five days after hospitalization from 97 COVID-19 patients were used to predict patient’s use of hospital resources. RESULTS: Alone, data on separate cell types—such as neutrophils—did not identify patients that required MV/ECMO. However, when structured as multicellular indicators, distinct data patterns displayed by such markers separated patients later needing or not needing MV/ECMO. Patients that eventually required MV/ECMO also revealed increased percentages of neutrophils and decreased percentages of lymphocytes on admission. DISCUSSION/CONCLUSION: Future use of limited hospital resources may be predicted when combinations of available blood leukocyte-related data are analyzed. New methods could also identify, upon admission, a subset of COVID-19 patients that reveal inflammation. Presented by individuals not previously exposed to MV/ECMO, this inflammation differs from the well-described inflammation induced after exposure to such resources. If shown to be reproducible in other clinical syndromes and populations, it is suggested that the analysis of immunological combinations may inform more and/or uncover novel information even in the absence of pre-established questions. |
format | Online Article Text |
id | pubmed-10664024 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-106640242023-11-08 From numbers to medical knowledge: harnessing combinatorial data patterns to predict COVID-19 resource needs and distinguish patient subsets Satashia, Parthkumar H. Franco, Pablo Moreno Rivas, Ariel L. Isha, Shahin Hanson, Abby Narra, Sai Abhishek Singh, Kawaljeet Jenkins, Anna Bhattacharyya, Anirban Guru, Pramod Chaudhary, Sanjay Kiley, Sean Shapiro, Anna Martin, Archer Thomas, Mathew Sareyyupoglu, Basar Libertin, Claudia R. Sanghavi, Devang K. Front Med (Lausanne) Medicine BACKGROUND: The COVID-19 pandemic intensified the use of scarce resources, including extracorporeal membrane oxygenation (ECMO) and mechanical ventilation (MV). The combinatorial features of the immune system may be considered to estimate such needs and facilitate continuous open-ended knowledge discovery. MATERIALS AND METHODS: Computer-generated distinct data patterns derived from 283 white blood cell counts collected within five days after hospitalization from 97 COVID-19 patients were used to predict patient’s use of hospital resources. RESULTS: Alone, data on separate cell types—such as neutrophils—did not identify patients that required MV/ECMO. However, when structured as multicellular indicators, distinct data patterns displayed by such markers separated patients later needing or not needing MV/ECMO. Patients that eventually required MV/ECMO also revealed increased percentages of neutrophils and decreased percentages of lymphocytes on admission. DISCUSSION/CONCLUSION: Future use of limited hospital resources may be predicted when combinations of available blood leukocyte-related data are analyzed. New methods could also identify, upon admission, a subset of COVID-19 patients that reveal inflammation. Presented by individuals not previously exposed to MV/ECMO, this inflammation differs from the well-described inflammation induced after exposure to such resources. If shown to be reproducible in other clinical syndromes and populations, it is suggested that the analysis of immunological combinations may inform more and/or uncover novel information even in the absence of pre-established questions. Frontiers Media S.A. 2023-11-08 /pmc/articles/PMC10664024/ /pubmed/38020180 http://dx.doi.org/10.3389/fmed.2023.1240426 Text en Copyright © 2023 Satashia, Franco, Rivas, Isha, Hanson, Narra, Singh, Jenkins, Bhattacharyya, Guru, Chaudhary, Kiley, Shapiro, Martin, Thomas, Sareyyupoglu, Libertin and Sanghavi. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Medicine Satashia, Parthkumar H. Franco, Pablo Moreno Rivas, Ariel L. Isha, Shahin Hanson, Abby Narra, Sai Abhishek Singh, Kawaljeet Jenkins, Anna Bhattacharyya, Anirban Guru, Pramod Chaudhary, Sanjay Kiley, Sean Shapiro, Anna Martin, Archer Thomas, Mathew Sareyyupoglu, Basar Libertin, Claudia R. Sanghavi, Devang K. From numbers to medical knowledge: harnessing combinatorial data patterns to predict COVID-19 resource needs and distinguish patient subsets |
title | From numbers to medical knowledge: harnessing combinatorial data patterns to predict COVID-19 resource needs and distinguish patient subsets |
title_full | From numbers to medical knowledge: harnessing combinatorial data patterns to predict COVID-19 resource needs and distinguish patient subsets |
title_fullStr | From numbers to medical knowledge: harnessing combinatorial data patterns to predict COVID-19 resource needs and distinguish patient subsets |
title_full_unstemmed | From numbers to medical knowledge: harnessing combinatorial data patterns to predict COVID-19 resource needs and distinguish patient subsets |
title_short | From numbers to medical knowledge: harnessing combinatorial data patterns to predict COVID-19 resource needs and distinguish patient subsets |
title_sort | from numbers to medical knowledge: harnessing combinatorial data patterns to predict covid-19 resource needs and distinguish patient subsets |
topic | Medicine |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10664024/ https://www.ncbi.nlm.nih.gov/pubmed/38020180 http://dx.doi.org/10.3389/fmed.2023.1240426 |
work_keys_str_mv | AT satashiaparthkumarh fromnumberstomedicalknowledgeharnessingcombinatorialdatapatternstopredictcovid19resourceneedsanddistinguishpatientsubsets AT francopablomoreno fromnumberstomedicalknowledgeharnessingcombinatorialdatapatternstopredictcovid19resourceneedsanddistinguishpatientsubsets AT rivasariell fromnumberstomedicalknowledgeharnessingcombinatorialdatapatternstopredictcovid19resourceneedsanddistinguishpatientsubsets AT ishashahin fromnumberstomedicalknowledgeharnessingcombinatorialdatapatternstopredictcovid19resourceneedsanddistinguishpatientsubsets AT hansonabby fromnumberstomedicalknowledgeharnessingcombinatorialdatapatternstopredictcovid19resourceneedsanddistinguishpatientsubsets AT narrasaiabhishek fromnumberstomedicalknowledgeharnessingcombinatorialdatapatternstopredictcovid19resourceneedsanddistinguishpatientsubsets AT singhkawaljeet fromnumberstomedicalknowledgeharnessingcombinatorialdatapatternstopredictcovid19resourceneedsanddistinguishpatientsubsets AT jenkinsanna fromnumberstomedicalknowledgeharnessingcombinatorialdatapatternstopredictcovid19resourceneedsanddistinguishpatientsubsets AT bhattacharyyaanirban fromnumberstomedicalknowledgeharnessingcombinatorialdatapatternstopredictcovid19resourceneedsanddistinguishpatientsubsets AT gurupramod fromnumberstomedicalknowledgeharnessingcombinatorialdatapatternstopredictcovid19resourceneedsanddistinguishpatientsubsets AT chaudharysanjay fromnumberstomedicalknowledgeharnessingcombinatorialdatapatternstopredictcovid19resourceneedsanddistinguishpatientsubsets AT kileysean fromnumberstomedicalknowledgeharnessingcombinatorialdatapatternstopredictcovid19resourceneedsanddistinguishpatientsubsets AT shapiroanna fromnumberstomedicalknowledgeharnessingcombinatorialdatapatternstopredictcovid19resourceneedsanddistinguishpatientsubsets AT martinarcher fromnumberstomedicalknowledgeharnessingcombinatorialdatapatternstopredictcovid19resourceneedsanddistinguishpatientsubsets AT thomasmathew fromnumberstomedicalknowledgeharnessingcombinatorialdatapatternstopredictcovid19resourceneedsanddistinguishpatientsubsets AT sareyyupoglubasar fromnumberstomedicalknowledgeharnessingcombinatorialdatapatternstopredictcovid19resourceneedsanddistinguishpatientsubsets AT libertinclaudiar fromnumberstomedicalknowledgeharnessingcombinatorialdatapatternstopredictcovid19resourceneedsanddistinguishpatientsubsets AT sanghavidevangk fromnumberstomedicalknowledgeharnessingcombinatorialdatapatternstopredictcovid19resourceneedsanddistinguishpatientsubsets |