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A DNA barcode library for woody plants in tropical and subtropical China

The application of DNA barcoding has been significantly limited by the scarcity of reliable specimens and inadequate coverage and replication across all species. The deficiency of DNA barcode reference coverage is particularly striking for highly biodiverse subtropical and tropical regions. In this...

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Autores principales: Jin, Lu, Shi, Hao-You, Li, Ting, Zhao, Nan, Xu, Yong, Xiao, Tian-Wen, Song, Feng, Ma, Chen-Xin, Li, Qiao-Ming, Lin, Lu-Xiang, Shao, Xiao-Na, Li, Bu-Hang, Mi, Xiang-Cheng, Ren, Hai-Bao, Qiao, Xiu-Juan, Lian, Ju-Yu, Du, Hu, Ge, Xue-Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10665436/
https://www.ncbi.nlm.nih.gov/pubmed/37993453
http://dx.doi.org/10.1038/s41597-023-02742-7
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author Jin, Lu
Shi, Hao-You
Li, Ting
Zhao, Nan
Xu, Yong
Xiao, Tian-Wen
Song, Feng
Ma, Chen-Xin
Li, Qiao-Ming
Lin, Lu-Xiang
Shao, Xiao-Na
Li, Bu-Hang
Mi, Xiang-Cheng
Ren, Hai-Bao
Qiao, Xiu-Juan
Lian, Ju-Yu
Du, Hu
Ge, Xue-Jun
author_facet Jin, Lu
Shi, Hao-You
Li, Ting
Zhao, Nan
Xu, Yong
Xiao, Tian-Wen
Song, Feng
Ma, Chen-Xin
Li, Qiao-Ming
Lin, Lu-Xiang
Shao, Xiao-Na
Li, Bu-Hang
Mi, Xiang-Cheng
Ren, Hai-Bao
Qiao, Xiu-Juan
Lian, Ju-Yu
Du, Hu
Ge, Xue-Jun
author_sort Jin, Lu
collection PubMed
description The application of DNA barcoding has been significantly limited by the scarcity of reliable specimens and inadequate coverage and replication across all species. The deficiency of DNA barcode reference coverage is particularly striking for highly biodiverse subtropical and tropical regions. In this study, we present a comprehensive barcode library for woody plants in tropical and subtropical China. Our dataset includes a standard barcode library comprising the four most widely used barcodes (rbcL, matK, ITS, and ITS2) for 2,520 species from 4,654 samples across 49 orders, 144 families, and 693 genera, along with 79 samples identified at the genus level. This dataset also provides a super-barcode library consisting of 1,239 samples from 1,139 species, 411 genera, 113 families, and 40 orders. This newly developed library will serve as a valuable resource for DNA barcoding research in tropical and subtropical China and bordering countries, enable more accurate species identification, and contribute to the conservation and management of tropical and subtropical forests.
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spelling pubmed-106654362023-11-22 A DNA barcode library for woody plants in tropical and subtropical China Jin, Lu Shi, Hao-You Li, Ting Zhao, Nan Xu, Yong Xiao, Tian-Wen Song, Feng Ma, Chen-Xin Li, Qiao-Ming Lin, Lu-Xiang Shao, Xiao-Na Li, Bu-Hang Mi, Xiang-Cheng Ren, Hai-Bao Qiao, Xiu-Juan Lian, Ju-Yu Du, Hu Ge, Xue-Jun Sci Data Data Descriptor The application of DNA barcoding has been significantly limited by the scarcity of reliable specimens and inadequate coverage and replication across all species. The deficiency of DNA barcode reference coverage is particularly striking for highly biodiverse subtropical and tropical regions. In this study, we present a comprehensive barcode library for woody plants in tropical and subtropical China. Our dataset includes a standard barcode library comprising the four most widely used barcodes (rbcL, matK, ITS, and ITS2) for 2,520 species from 4,654 samples across 49 orders, 144 families, and 693 genera, along with 79 samples identified at the genus level. This dataset also provides a super-barcode library consisting of 1,239 samples from 1,139 species, 411 genera, 113 families, and 40 orders. This newly developed library will serve as a valuable resource for DNA barcoding research in tropical and subtropical China and bordering countries, enable more accurate species identification, and contribute to the conservation and management of tropical and subtropical forests. Nature Publishing Group UK 2023-11-22 /pmc/articles/PMC10665436/ /pubmed/37993453 http://dx.doi.org/10.1038/s41597-023-02742-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Jin, Lu
Shi, Hao-You
Li, Ting
Zhao, Nan
Xu, Yong
Xiao, Tian-Wen
Song, Feng
Ma, Chen-Xin
Li, Qiao-Ming
Lin, Lu-Xiang
Shao, Xiao-Na
Li, Bu-Hang
Mi, Xiang-Cheng
Ren, Hai-Bao
Qiao, Xiu-Juan
Lian, Ju-Yu
Du, Hu
Ge, Xue-Jun
A DNA barcode library for woody plants in tropical and subtropical China
title A DNA barcode library for woody plants in tropical and subtropical China
title_full A DNA barcode library for woody plants in tropical and subtropical China
title_fullStr A DNA barcode library for woody plants in tropical and subtropical China
title_full_unstemmed A DNA barcode library for woody plants in tropical and subtropical China
title_short A DNA barcode library for woody plants in tropical and subtropical China
title_sort dna barcode library for woody plants in tropical and subtropical china
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10665436/
https://www.ncbi.nlm.nih.gov/pubmed/37993453
http://dx.doi.org/10.1038/s41597-023-02742-7
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