Cargando…
A DNA barcode library for woody plants in tropical and subtropical China
The application of DNA barcoding has been significantly limited by the scarcity of reliable specimens and inadequate coverage and replication across all species. The deficiency of DNA barcode reference coverage is particularly striking for highly biodiverse subtropical and tropical regions. In this...
Autores principales: | , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10665436/ https://www.ncbi.nlm.nih.gov/pubmed/37993453 http://dx.doi.org/10.1038/s41597-023-02742-7 |
_version_ | 1785148870632669184 |
---|---|
author | Jin, Lu Shi, Hao-You Li, Ting Zhao, Nan Xu, Yong Xiao, Tian-Wen Song, Feng Ma, Chen-Xin Li, Qiao-Ming Lin, Lu-Xiang Shao, Xiao-Na Li, Bu-Hang Mi, Xiang-Cheng Ren, Hai-Bao Qiao, Xiu-Juan Lian, Ju-Yu Du, Hu Ge, Xue-Jun |
author_facet | Jin, Lu Shi, Hao-You Li, Ting Zhao, Nan Xu, Yong Xiao, Tian-Wen Song, Feng Ma, Chen-Xin Li, Qiao-Ming Lin, Lu-Xiang Shao, Xiao-Na Li, Bu-Hang Mi, Xiang-Cheng Ren, Hai-Bao Qiao, Xiu-Juan Lian, Ju-Yu Du, Hu Ge, Xue-Jun |
author_sort | Jin, Lu |
collection | PubMed |
description | The application of DNA barcoding has been significantly limited by the scarcity of reliable specimens and inadequate coverage and replication across all species. The deficiency of DNA barcode reference coverage is particularly striking for highly biodiverse subtropical and tropical regions. In this study, we present a comprehensive barcode library for woody plants in tropical and subtropical China. Our dataset includes a standard barcode library comprising the four most widely used barcodes (rbcL, matK, ITS, and ITS2) for 2,520 species from 4,654 samples across 49 orders, 144 families, and 693 genera, along with 79 samples identified at the genus level. This dataset also provides a super-barcode library consisting of 1,239 samples from 1,139 species, 411 genera, 113 families, and 40 orders. This newly developed library will serve as a valuable resource for DNA barcoding research in tropical and subtropical China and bordering countries, enable more accurate species identification, and contribute to the conservation and management of tropical and subtropical forests. |
format | Online Article Text |
id | pubmed-10665436 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-106654362023-11-22 A DNA barcode library for woody plants in tropical and subtropical China Jin, Lu Shi, Hao-You Li, Ting Zhao, Nan Xu, Yong Xiao, Tian-Wen Song, Feng Ma, Chen-Xin Li, Qiao-Ming Lin, Lu-Xiang Shao, Xiao-Na Li, Bu-Hang Mi, Xiang-Cheng Ren, Hai-Bao Qiao, Xiu-Juan Lian, Ju-Yu Du, Hu Ge, Xue-Jun Sci Data Data Descriptor The application of DNA barcoding has been significantly limited by the scarcity of reliable specimens and inadequate coverage and replication across all species. The deficiency of DNA barcode reference coverage is particularly striking for highly biodiverse subtropical and tropical regions. In this study, we present a comprehensive barcode library for woody plants in tropical and subtropical China. Our dataset includes a standard barcode library comprising the four most widely used barcodes (rbcL, matK, ITS, and ITS2) for 2,520 species from 4,654 samples across 49 orders, 144 families, and 693 genera, along with 79 samples identified at the genus level. This dataset also provides a super-barcode library consisting of 1,239 samples from 1,139 species, 411 genera, 113 families, and 40 orders. This newly developed library will serve as a valuable resource for DNA barcoding research in tropical and subtropical China and bordering countries, enable more accurate species identification, and contribute to the conservation and management of tropical and subtropical forests. Nature Publishing Group UK 2023-11-22 /pmc/articles/PMC10665436/ /pubmed/37993453 http://dx.doi.org/10.1038/s41597-023-02742-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Data Descriptor Jin, Lu Shi, Hao-You Li, Ting Zhao, Nan Xu, Yong Xiao, Tian-Wen Song, Feng Ma, Chen-Xin Li, Qiao-Ming Lin, Lu-Xiang Shao, Xiao-Na Li, Bu-Hang Mi, Xiang-Cheng Ren, Hai-Bao Qiao, Xiu-Juan Lian, Ju-Yu Du, Hu Ge, Xue-Jun A DNA barcode library for woody plants in tropical and subtropical China |
title | A DNA barcode library for woody plants in tropical and subtropical China |
title_full | A DNA barcode library for woody plants in tropical and subtropical China |
title_fullStr | A DNA barcode library for woody plants in tropical and subtropical China |
title_full_unstemmed | A DNA barcode library for woody plants in tropical and subtropical China |
title_short | A DNA barcode library for woody plants in tropical and subtropical China |
title_sort | dna barcode library for woody plants in tropical and subtropical china |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10665436/ https://www.ncbi.nlm.nih.gov/pubmed/37993453 http://dx.doi.org/10.1038/s41597-023-02742-7 |
work_keys_str_mv | AT jinlu adnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT shihaoyou adnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT liting adnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT zhaonan adnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT xuyong adnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT xiaotianwen adnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT songfeng adnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT machenxin adnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT liqiaoming adnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT linluxiang adnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT shaoxiaona adnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT libuhang adnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT mixiangcheng adnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT renhaibao adnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT qiaoxiujuan adnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT lianjuyu adnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT duhu adnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT gexuejun adnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT jinlu dnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT shihaoyou dnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT liting dnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT zhaonan dnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT xuyong dnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT xiaotianwen dnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT songfeng dnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT machenxin dnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT liqiaoming dnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT linluxiang dnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT shaoxiaona dnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT libuhang dnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT mixiangcheng dnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT renhaibao dnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT qiaoxiujuan dnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT lianjuyu dnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT duhu dnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina AT gexuejun dnabarcodelibraryforwoodyplantsintropicalandsubtropicalchina |