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Complete mitochondrial genome of Parasa sinica: New insights into the phylogeny of Limacodidae

In this study, the whole mitochondrial genome (mitogenome) of Parasa sinica was sequenced. It contains 15,306 base pairs (bp), 13 protein-coding genes (PCGs), two ribosomal RNAs (rRNAs), 22 transfer RNAs (tRNAs), and one non-coding regulatory area (CR), all of which are shared by other lepidopterans...

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Autores principales: Zhang, Si-Pei, Zhang, Jie, Xu, Jie, Wang, Qing-Hao, Ye, Yang, Wang, Gang, Zhang, Hua-Bin, Zhang, Dai-Zhen, Tang, Bo-Ping, Liu, Qiu-Ning
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10665674/
https://www.ncbi.nlm.nih.gov/pubmed/38027771
http://dx.doi.org/10.1016/j.heliyon.2023.e21375
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author Zhang, Si-Pei
Zhang, Jie
Xu, Jie
Wang, Qing-Hao
Ye, Yang
Wang, Gang
Zhang, Hua-Bin
Zhang, Dai-Zhen
Tang, Bo-Ping
Liu, Qiu-Ning
author_facet Zhang, Si-Pei
Zhang, Jie
Xu, Jie
Wang, Qing-Hao
Ye, Yang
Wang, Gang
Zhang, Hua-Bin
Zhang, Dai-Zhen
Tang, Bo-Ping
Liu, Qiu-Ning
author_sort Zhang, Si-Pei
collection PubMed
description In this study, the whole mitochondrial genome (mitogenome) of Parasa sinica was sequenced. It contains 15,306 base pairs (bp), 13 protein-coding genes (PCGs), two ribosomal RNAs (rRNAs), 22 transfer RNAs (tRNAs), and one non-coding regulatory area (CR), all of which are shared by other lepidopterans. It follows the same gene order as ordinary lepidopterans. Further, out of these 37 genes, 23 are present on the heavy strand whereas the remaining 14 are located on the light strand. The A + T composition of the mitogenome is relatively high. Although P. sinica has a negative AT-skew and GC-skew, the GC-skew value is significantly lower than the AT-skew value. All PCGs, with the exception of CO1, carry the same start codon (ATN). All tRNAs exhibit the usual cloverleaf secondary structure. We identified the conserved motif “ATAGA + poly-T″ found in other lepidopteran insects at the beginning of the CR. We collected the concatenated PCGs sequences in the mitochondrial genome of 15 species of Zygaenoidea, with the sequences of Geometridae as outgroups, including P. sinica, and constructed phylogenetic trees using Bayesian inference (BI) and maximum likelihood (ML) methods. The monolineage of each superfamily is usually well supported. Based on phylogenetic analysis, P. sinica is a member of family Limacodidae, strongly supporting the monophyly of the Zygaenoidea groups.
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spelling pubmed-106656742023-10-23 Complete mitochondrial genome of Parasa sinica: New insights into the phylogeny of Limacodidae Zhang, Si-Pei Zhang, Jie Xu, Jie Wang, Qing-Hao Ye, Yang Wang, Gang Zhang, Hua-Bin Zhang, Dai-Zhen Tang, Bo-Ping Liu, Qiu-Ning Heliyon Research Article In this study, the whole mitochondrial genome (mitogenome) of Parasa sinica was sequenced. It contains 15,306 base pairs (bp), 13 protein-coding genes (PCGs), two ribosomal RNAs (rRNAs), 22 transfer RNAs (tRNAs), and one non-coding regulatory area (CR), all of which are shared by other lepidopterans. It follows the same gene order as ordinary lepidopterans. Further, out of these 37 genes, 23 are present on the heavy strand whereas the remaining 14 are located on the light strand. The A + T composition of the mitogenome is relatively high. Although P. sinica has a negative AT-skew and GC-skew, the GC-skew value is significantly lower than the AT-skew value. All PCGs, with the exception of CO1, carry the same start codon (ATN). All tRNAs exhibit the usual cloverleaf secondary structure. We identified the conserved motif “ATAGA + poly-T″ found in other lepidopteran insects at the beginning of the CR. We collected the concatenated PCGs sequences in the mitochondrial genome of 15 species of Zygaenoidea, with the sequences of Geometridae as outgroups, including P. sinica, and constructed phylogenetic trees using Bayesian inference (BI) and maximum likelihood (ML) methods. The monolineage of each superfamily is usually well supported. Based on phylogenetic analysis, P. sinica is a member of family Limacodidae, strongly supporting the monophyly of the Zygaenoidea groups. Elsevier 2023-10-23 /pmc/articles/PMC10665674/ /pubmed/38027771 http://dx.doi.org/10.1016/j.heliyon.2023.e21375 Text en © 2023 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Zhang, Si-Pei
Zhang, Jie
Xu, Jie
Wang, Qing-Hao
Ye, Yang
Wang, Gang
Zhang, Hua-Bin
Zhang, Dai-Zhen
Tang, Bo-Ping
Liu, Qiu-Ning
Complete mitochondrial genome of Parasa sinica: New insights into the phylogeny of Limacodidae
title Complete mitochondrial genome of Parasa sinica: New insights into the phylogeny of Limacodidae
title_full Complete mitochondrial genome of Parasa sinica: New insights into the phylogeny of Limacodidae
title_fullStr Complete mitochondrial genome of Parasa sinica: New insights into the phylogeny of Limacodidae
title_full_unstemmed Complete mitochondrial genome of Parasa sinica: New insights into the phylogeny of Limacodidae
title_short Complete mitochondrial genome of Parasa sinica: New insights into the phylogeny of Limacodidae
title_sort complete mitochondrial genome of parasa sinica: new insights into the phylogeny of limacodidae
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10665674/
https://www.ncbi.nlm.nih.gov/pubmed/38027771
http://dx.doi.org/10.1016/j.heliyon.2023.e21375
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