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Comparison between vision transformers and convolutional neural networks to predict non-small lung cancer recurrence

Non-Small cell lung cancer (NSCLC) is one of the most dangerous cancers, with 85% of all new lung cancer diagnoses and a 30–55% of recurrence rate after surgery. Thus, an accurate prediction of recurrence risk in NSCLC patients during diagnosis could be essential to drive targeted therapies preventi...

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Autores principales: Fanizzi, Annarita, Fadda, Federico, Comes, Maria Colomba, Bove, Samantha, Catino, Annamaria, Di Benedetto, Erika, Milella, Angelo, Montrone, Michele, Nardone, Annalisa, Soranno, Clara, Rizzo, Alessandro, Guven, Deniz Can, Galetta, Domenico, Massafra, Raffaella
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10667245/
https://www.ncbi.nlm.nih.gov/pubmed/37996651
http://dx.doi.org/10.1038/s41598-023-48004-9
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author Fanizzi, Annarita
Fadda, Federico
Comes, Maria Colomba
Bove, Samantha
Catino, Annamaria
Di Benedetto, Erika
Milella, Angelo
Montrone, Michele
Nardone, Annalisa
Soranno, Clara
Rizzo, Alessandro
Guven, Deniz Can
Galetta, Domenico
Massafra, Raffaella
author_facet Fanizzi, Annarita
Fadda, Federico
Comes, Maria Colomba
Bove, Samantha
Catino, Annamaria
Di Benedetto, Erika
Milella, Angelo
Montrone, Michele
Nardone, Annalisa
Soranno, Clara
Rizzo, Alessandro
Guven, Deniz Can
Galetta, Domenico
Massafra, Raffaella
author_sort Fanizzi, Annarita
collection PubMed
description Non-Small cell lung cancer (NSCLC) is one of the most dangerous cancers, with 85% of all new lung cancer diagnoses and a 30–55% of recurrence rate after surgery. Thus, an accurate prediction of recurrence risk in NSCLC patients during diagnosis could be essential to drive targeted therapies preventing either overtreatment or undertreatment of cancer patients. The radiomic analysis of CT images has already shown great potential in solving this task; specifically, Convolutional Neural Networks (CNNs) have already been proposed providing good performances. Recently, Vision Transformers (ViTs) have been introduced, reaching comparable and even better performances than traditional CNNs in image classification. The aim of the proposed paper was to compare the performances of different state-of-the-art deep learning algorithms to predict cancer recurrence in NSCLC patients. In this work, using a public database of 144 patients, we implemented a transfer learning approach, involving different Transformers architectures like pre-trained ViTs, pre-trained Pyramid Vision Transformers, and pre-trained Swin Transformers to predict the recurrence of NSCLC patients from CT images, comparing their performances with state-of-the-art CNNs. Although, the best performances in this study are reached via CNNs with AUC, Accuracy, Sensitivity, Specificity, and Precision equal to 0.91, 0.89, 0.85, 0.90, and 0.78, respectively, Transformer architectures reach comparable ones with AUC, Accuracy, Sensitivity, Specificity, and Precision equal to 0.90, 0.86, 0.81, 0.89, and 0.75, respectively. Based on our preliminary experimental results, it appears that Transformers architectures do not add improvements in terms of predictive performance to the addressed problem.
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spelling pubmed-106672452023-11-23 Comparison between vision transformers and convolutional neural networks to predict non-small lung cancer recurrence Fanizzi, Annarita Fadda, Federico Comes, Maria Colomba Bove, Samantha Catino, Annamaria Di Benedetto, Erika Milella, Angelo Montrone, Michele Nardone, Annalisa Soranno, Clara Rizzo, Alessandro Guven, Deniz Can Galetta, Domenico Massafra, Raffaella Sci Rep Article Non-Small cell lung cancer (NSCLC) is one of the most dangerous cancers, with 85% of all new lung cancer diagnoses and a 30–55% of recurrence rate after surgery. Thus, an accurate prediction of recurrence risk in NSCLC patients during diagnosis could be essential to drive targeted therapies preventing either overtreatment or undertreatment of cancer patients. The radiomic analysis of CT images has already shown great potential in solving this task; specifically, Convolutional Neural Networks (CNNs) have already been proposed providing good performances. Recently, Vision Transformers (ViTs) have been introduced, reaching comparable and even better performances than traditional CNNs in image classification. The aim of the proposed paper was to compare the performances of different state-of-the-art deep learning algorithms to predict cancer recurrence in NSCLC patients. In this work, using a public database of 144 patients, we implemented a transfer learning approach, involving different Transformers architectures like pre-trained ViTs, pre-trained Pyramid Vision Transformers, and pre-trained Swin Transformers to predict the recurrence of NSCLC patients from CT images, comparing their performances with state-of-the-art CNNs. Although, the best performances in this study are reached via CNNs with AUC, Accuracy, Sensitivity, Specificity, and Precision equal to 0.91, 0.89, 0.85, 0.90, and 0.78, respectively, Transformer architectures reach comparable ones with AUC, Accuracy, Sensitivity, Specificity, and Precision equal to 0.90, 0.86, 0.81, 0.89, and 0.75, respectively. Based on our preliminary experimental results, it appears that Transformers architectures do not add improvements in terms of predictive performance to the addressed problem. Nature Publishing Group UK 2023-11-23 /pmc/articles/PMC10667245/ /pubmed/37996651 http://dx.doi.org/10.1038/s41598-023-48004-9 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Fanizzi, Annarita
Fadda, Federico
Comes, Maria Colomba
Bove, Samantha
Catino, Annamaria
Di Benedetto, Erika
Milella, Angelo
Montrone, Michele
Nardone, Annalisa
Soranno, Clara
Rizzo, Alessandro
Guven, Deniz Can
Galetta, Domenico
Massafra, Raffaella
Comparison between vision transformers and convolutional neural networks to predict non-small lung cancer recurrence
title Comparison between vision transformers and convolutional neural networks to predict non-small lung cancer recurrence
title_full Comparison between vision transformers and convolutional neural networks to predict non-small lung cancer recurrence
title_fullStr Comparison between vision transformers and convolutional neural networks to predict non-small lung cancer recurrence
title_full_unstemmed Comparison between vision transformers and convolutional neural networks to predict non-small lung cancer recurrence
title_short Comparison between vision transformers and convolutional neural networks to predict non-small lung cancer recurrence
title_sort comparison between vision transformers and convolutional neural networks to predict non-small lung cancer recurrence
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10667245/
https://www.ncbi.nlm.nih.gov/pubmed/37996651
http://dx.doi.org/10.1038/s41598-023-48004-9
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