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A novel prognostic classification integrating lipid metabolism and immune co-related genes in acute myeloid leukemia

BACKGROUND: As a severe hematological malignancy in adults, acute myeloid leukemia (AML) is characterized by high heterogeneity and complexity. Emerging evidence highlights the importance of the tumor immune microenvironment and lipid metabolism in cancer progression. In this study, we comprehensive...

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Autores principales: Li, Ding, Wu, Xuan, Cheng, Cheng, Liang, Jiaming, Liang, Yinfeng, Li, Han, Guo, Xiaohan, Li, Ruchun, Zhang, Wenzhou, Song, Wenping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10667441/
https://www.ncbi.nlm.nih.gov/pubmed/38022627
http://dx.doi.org/10.3389/fimmu.2023.1290968
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author Li, Ding
Wu, Xuan
Cheng, Cheng
Liang, Jiaming
Liang, Yinfeng
Li, Han
Guo, Xiaohan
Li, Ruchun
Zhang, Wenzhou
Song, Wenping
author_facet Li, Ding
Wu, Xuan
Cheng, Cheng
Liang, Jiaming
Liang, Yinfeng
Li, Han
Guo, Xiaohan
Li, Ruchun
Zhang, Wenzhou
Song, Wenping
author_sort Li, Ding
collection PubMed
description BACKGROUND: As a severe hematological malignancy in adults, acute myeloid leukemia (AML) is characterized by high heterogeneity and complexity. Emerging evidence highlights the importance of the tumor immune microenvironment and lipid metabolism in cancer progression. In this study, we comprehensively evaluated the expression profiles of genes related to lipid metabolism and immune modifications to develop a prognostic risk signature for AML. METHODS: First, we extracted the mRNA expression profiles of bone marrow samples from an AML cohort from The Cancer Genome Atlas database and employed Cox regression analysis to select prognostic hub genes associated with lipid metabolism and immunity. We then constructed a prognostic signature with hub genes significantly related to survival and validated the stability and robustness of the prognostic signature using three external datasets. Gene Set Enrichment Analysis was implemented to explore the underlying biological pathways related to the risk signature. Finally, the correlation between signature, immunity, and drug sensitivity was explored. RESULTS: Eight genes were identified from the analysis and verified in the clinical samples, including APOBEC3C, MSMO1, ATP13A2, SMPDL3B, PLA2G4A, TNFSF15, IL2RA, and HGF, to develop a risk-scoring model that effectively stratified patients with AML into low- and high-risk groups, demonstrating significant differences in survival time. The risk signature was negatively related to immune cell infiltration. Samples with AML in the low-risk group, as defined by the risk signature, were more likely to be responsive to immunotherapy, whereas those at high risk responded better to specific targeted drugs. CONCLUSIONS: This study reveals the significant role of lipid metabolism- and immune-related genes in prognosis and demonstrated the utility of these signature genes as reliable bioinformatic indicators for predicting survival in patients with AML. The risk-scoring model based on these prognostic signature genes holds promise as a valuable tool for individualized treatment decision-making, providing valuable insights for improving patient prognosis and treatment outcomes in AML.
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spelling pubmed-106674412023-01-01 A novel prognostic classification integrating lipid metabolism and immune co-related genes in acute myeloid leukemia Li, Ding Wu, Xuan Cheng, Cheng Liang, Jiaming Liang, Yinfeng Li, Han Guo, Xiaohan Li, Ruchun Zhang, Wenzhou Song, Wenping Front Immunol Immunology BACKGROUND: As a severe hematological malignancy in adults, acute myeloid leukemia (AML) is characterized by high heterogeneity and complexity. Emerging evidence highlights the importance of the tumor immune microenvironment and lipid metabolism in cancer progression. In this study, we comprehensively evaluated the expression profiles of genes related to lipid metabolism and immune modifications to develop a prognostic risk signature for AML. METHODS: First, we extracted the mRNA expression profiles of bone marrow samples from an AML cohort from The Cancer Genome Atlas database and employed Cox regression analysis to select prognostic hub genes associated with lipid metabolism and immunity. We then constructed a prognostic signature with hub genes significantly related to survival and validated the stability and robustness of the prognostic signature using three external datasets. Gene Set Enrichment Analysis was implemented to explore the underlying biological pathways related to the risk signature. Finally, the correlation between signature, immunity, and drug sensitivity was explored. RESULTS: Eight genes were identified from the analysis and verified in the clinical samples, including APOBEC3C, MSMO1, ATP13A2, SMPDL3B, PLA2G4A, TNFSF15, IL2RA, and HGF, to develop a risk-scoring model that effectively stratified patients with AML into low- and high-risk groups, demonstrating significant differences in survival time. The risk signature was negatively related to immune cell infiltration. Samples with AML in the low-risk group, as defined by the risk signature, were more likely to be responsive to immunotherapy, whereas those at high risk responded better to specific targeted drugs. CONCLUSIONS: This study reveals the significant role of lipid metabolism- and immune-related genes in prognosis and demonstrated the utility of these signature genes as reliable bioinformatic indicators for predicting survival in patients with AML. The risk-scoring model based on these prognostic signature genes holds promise as a valuable tool for individualized treatment decision-making, providing valuable insights for improving patient prognosis and treatment outcomes in AML. Frontiers Media S.A. 2023-11-10 /pmc/articles/PMC10667441/ /pubmed/38022627 http://dx.doi.org/10.3389/fimmu.2023.1290968 Text en Copyright © 2023 Li, Wu, Cheng, Liang, Liang, Li, Guo, Li, Zhang and Song https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Li, Ding
Wu, Xuan
Cheng, Cheng
Liang, Jiaming
Liang, Yinfeng
Li, Han
Guo, Xiaohan
Li, Ruchun
Zhang, Wenzhou
Song, Wenping
A novel prognostic classification integrating lipid metabolism and immune co-related genes in acute myeloid leukemia
title A novel prognostic classification integrating lipid metabolism and immune co-related genes in acute myeloid leukemia
title_full A novel prognostic classification integrating lipid metabolism and immune co-related genes in acute myeloid leukemia
title_fullStr A novel prognostic classification integrating lipid metabolism and immune co-related genes in acute myeloid leukemia
title_full_unstemmed A novel prognostic classification integrating lipid metabolism and immune co-related genes in acute myeloid leukemia
title_short A novel prognostic classification integrating lipid metabolism and immune co-related genes in acute myeloid leukemia
title_sort novel prognostic classification integrating lipid metabolism and immune co-related genes in acute myeloid leukemia
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10667441/
https://www.ncbi.nlm.nih.gov/pubmed/38022627
http://dx.doi.org/10.3389/fimmu.2023.1290968
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