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Predicting Thalassemia Using Feature Selection Techniques: A Comparative Analysis
Thalassemia represents one of the most common genetic disorders worldwide, characterized by defects in hemoglobin synthesis. The affected individuals suffer from malfunctioning of one or more of the four globin genes, leading to chronic hemolytic anemia, an imbalance in the hemoglobin chain ratio, i...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10670018/ https://www.ncbi.nlm.nih.gov/pubmed/37998577 http://dx.doi.org/10.3390/diagnostics13223441 |
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author | Saleem, Muniba Aslam, Waqar Lali, Muhammad Ikram Ullah Rauf, Hafiz Tayyab Nasr, Emad Abouel |
author_facet | Saleem, Muniba Aslam, Waqar Lali, Muhammad Ikram Ullah Rauf, Hafiz Tayyab Nasr, Emad Abouel |
author_sort | Saleem, Muniba |
collection | PubMed |
description | Thalassemia represents one of the most common genetic disorders worldwide, characterized by defects in hemoglobin synthesis. The affected individuals suffer from malfunctioning of one or more of the four globin genes, leading to chronic hemolytic anemia, an imbalance in the hemoglobin chain ratio, iron overload, and ineffective erythropoiesis. Despite the challenges posed by this condition, recent years have witnessed significant advancements in diagnosis, therapy, and transfusion support, significantly improving the prognosis for thalassemia patients. This research empirically evaluates the efficacy of models constructed using classification methods and explores the effectiveness of relevant features that are derived using various machine-learning techniques. Five feature selection approaches, namely Chi-Square (χ2), Exploratory Factor Score (EFS), tree-based Recursive Feature Elimination (RFE), gradient-based RFE, and Linear Regression Coefficient, were employed to determine the optimal feature set. Nine classifiers, namely K-Nearest Neighbors (KNN), Decision Trees (DT), Gradient Boosting Classifier (GBC), Linear Regression (LR), AdaBoost, Extreme Gradient Boosting (XGB), Random Forest (RF), Light Gradient Boosting Machine (LGBM), and Support Vector Machine (SVM), were utilized to evaluate the performance. The χ2 method achieved accuracy, registering 91.56% precision, 91.04% recall, and 92.65% f-score when aligned with the LR classifier. Moreover, the results underscore that amalgamating over-sampling with Synthetic Minority Over-sampling Technique (SMOTE), RFE, and 10-fold cross-validation markedly elevates the detection accuracy for αT patients. Notably, the Gradient Boosting Classifier (GBC) achieves 93.46% accuracy, 93.89% recall, and 92.72% F1 score. |
format | Online Article Text |
id | pubmed-10670018 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-106700182023-11-14 Predicting Thalassemia Using Feature Selection Techniques: A Comparative Analysis Saleem, Muniba Aslam, Waqar Lali, Muhammad Ikram Ullah Rauf, Hafiz Tayyab Nasr, Emad Abouel Diagnostics (Basel) Article Thalassemia represents one of the most common genetic disorders worldwide, characterized by defects in hemoglobin synthesis. The affected individuals suffer from malfunctioning of one or more of the four globin genes, leading to chronic hemolytic anemia, an imbalance in the hemoglobin chain ratio, iron overload, and ineffective erythropoiesis. Despite the challenges posed by this condition, recent years have witnessed significant advancements in diagnosis, therapy, and transfusion support, significantly improving the prognosis for thalassemia patients. This research empirically evaluates the efficacy of models constructed using classification methods and explores the effectiveness of relevant features that are derived using various machine-learning techniques. Five feature selection approaches, namely Chi-Square (χ2), Exploratory Factor Score (EFS), tree-based Recursive Feature Elimination (RFE), gradient-based RFE, and Linear Regression Coefficient, were employed to determine the optimal feature set. Nine classifiers, namely K-Nearest Neighbors (KNN), Decision Trees (DT), Gradient Boosting Classifier (GBC), Linear Regression (LR), AdaBoost, Extreme Gradient Boosting (XGB), Random Forest (RF), Light Gradient Boosting Machine (LGBM), and Support Vector Machine (SVM), were utilized to evaluate the performance. The χ2 method achieved accuracy, registering 91.56% precision, 91.04% recall, and 92.65% f-score when aligned with the LR classifier. Moreover, the results underscore that amalgamating over-sampling with Synthetic Minority Over-sampling Technique (SMOTE), RFE, and 10-fold cross-validation markedly elevates the detection accuracy for αT patients. Notably, the Gradient Boosting Classifier (GBC) achieves 93.46% accuracy, 93.89% recall, and 92.72% F1 score. MDPI 2023-11-14 /pmc/articles/PMC10670018/ /pubmed/37998577 http://dx.doi.org/10.3390/diagnostics13223441 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Saleem, Muniba Aslam, Waqar Lali, Muhammad Ikram Ullah Rauf, Hafiz Tayyab Nasr, Emad Abouel Predicting Thalassemia Using Feature Selection Techniques: A Comparative Analysis |
title | Predicting Thalassemia Using Feature Selection Techniques: A Comparative Analysis |
title_full | Predicting Thalassemia Using Feature Selection Techniques: A Comparative Analysis |
title_fullStr | Predicting Thalassemia Using Feature Selection Techniques: A Comparative Analysis |
title_full_unstemmed | Predicting Thalassemia Using Feature Selection Techniques: A Comparative Analysis |
title_short | Predicting Thalassemia Using Feature Selection Techniques: A Comparative Analysis |
title_sort | predicting thalassemia using feature selection techniques: a comparative analysis |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10670018/ https://www.ncbi.nlm.nih.gov/pubmed/37998577 http://dx.doi.org/10.3390/diagnostics13223441 |
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