Cargando…
Analysis of Growth Trajectories and Verification of Related SNPs in Populus deltoides
As an important timber genus with high economic and ecological values, Populus is a model for dissecting the genetic architecture of growth traits in perennial forest trees. However, the genetic mechanisms of longitudinal growth traits in poplar remain incompletely understood. In this study, we cond...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10670923/ https://www.ncbi.nlm.nih.gov/pubmed/38003382 http://dx.doi.org/10.3390/ijms242216192 |
_version_ | 1785140033724874752 |
---|---|
author | Wang, Yaolin Wang, Zesen Zhu, Sheng Pan, Huixin Ding, Changjun Xu, Meng |
author_facet | Wang, Yaolin Wang, Zesen Zhu, Sheng Pan, Huixin Ding, Changjun Xu, Meng |
author_sort | Wang, Yaolin |
collection | PubMed |
description | As an important timber genus with high economic and ecological values, Populus is a model for dissecting the genetic architecture of growth traits in perennial forest trees. However, the genetic mechanisms of longitudinal growth traits in poplar remain incompletely understood. In this study, we conducted longitudinal genetic analysis of height and diameter at breast height (DBH) in eleven-year poplar clones using ultra-deep sequencing datasets. We compared four S-shaped growth models, including asymptotic, Gompertz, logistic, and Richard, on eleven-year height and DBH records in terms of five metrics. We constructed the best-fitting growth model (Richard) and determined poplar ontogenetic stages by virtue of growth curve fitting and likelihood ratio testing. This study provides some scientific clues for temporal variation of longitudinal growth traits in Populus species. |
format | Online Article Text |
id | pubmed-10670923 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-106709232023-11-10 Analysis of Growth Trajectories and Verification of Related SNPs in Populus deltoides Wang, Yaolin Wang, Zesen Zhu, Sheng Pan, Huixin Ding, Changjun Xu, Meng Int J Mol Sci Article As an important timber genus with high economic and ecological values, Populus is a model for dissecting the genetic architecture of growth traits in perennial forest trees. However, the genetic mechanisms of longitudinal growth traits in poplar remain incompletely understood. In this study, we conducted longitudinal genetic analysis of height and diameter at breast height (DBH) in eleven-year poplar clones using ultra-deep sequencing datasets. We compared four S-shaped growth models, including asymptotic, Gompertz, logistic, and Richard, on eleven-year height and DBH records in terms of five metrics. We constructed the best-fitting growth model (Richard) and determined poplar ontogenetic stages by virtue of growth curve fitting and likelihood ratio testing. This study provides some scientific clues for temporal variation of longitudinal growth traits in Populus species. MDPI 2023-11-10 /pmc/articles/PMC10670923/ /pubmed/38003382 http://dx.doi.org/10.3390/ijms242216192 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Wang, Yaolin Wang, Zesen Zhu, Sheng Pan, Huixin Ding, Changjun Xu, Meng Analysis of Growth Trajectories and Verification of Related SNPs in Populus deltoides |
title | Analysis of Growth Trajectories and Verification of Related SNPs in Populus deltoides |
title_full | Analysis of Growth Trajectories and Verification of Related SNPs in Populus deltoides |
title_fullStr | Analysis of Growth Trajectories and Verification of Related SNPs in Populus deltoides |
title_full_unstemmed | Analysis of Growth Trajectories and Verification of Related SNPs in Populus deltoides |
title_short | Analysis of Growth Trajectories and Verification of Related SNPs in Populus deltoides |
title_sort | analysis of growth trajectories and verification of related snps in populus deltoides |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10670923/ https://www.ncbi.nlm.nih.gov/pubmed/38003382 http://dx.doi.org/10.3390/ijms242216192 |
work_keys_str_mv | AT wangyaolin analysisofgrowthtrajectoriesandverificationofrelatedsnpsinpopulusdeltoides AT wangzesen analysisofgrowthtrajectoriesandverificationofrelatedsnpsinpopulusdeltoides AT zhusheng analysisofgrowthtrajectoriesandverificationofrelatedsnpsinpopulusdeltoides AT panhuixin analysisofgrowthtrajectoriesandverificationofrelatedsnpsinpopulusdeltoides AT dingchangjun analysisofgrowthtrajectoriesandverificationofrelatedsnpsinpopulusdeltoides AT xumeng analysisofgrowthtrajectoriesandverificationofrelatedsnpsinpopulusdeltoides |