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Analysis of Growth Trajectories and Verification of Related SNPs in Populus deltoides

As an important timber genus with high economic and ecological values, Populus is a model for dissecting the genetic architecture of growth traits in perennial forest trees. However, the genetic mechanisms of longitudinal growth traits in poplar remain incompletely understood. In this study, we cond...

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Detalles Bibliográficos
Autores principales: Wang, Yaolin, Wang, Zesen, Zhu, Sheng, Pan, Huixin, Ding, Changjun, Xu, Meng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10670923/
https://www.ncbi.nlm.nih.gov/pubmed/38003382
http://dx.doi.org/10.3390/ijms242216192
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author Wang, Yaolin
Wang, Zesen
Zhu, Sheng
Pan, Huixin
Ding, Changjun
Xu, Meng
author_facet Wang, Yaolin
Wang, Zesen
Zhu, Sheng
Pan, Huixin
Ding, Changjun
Xu, Meng
author_sort Wang, Yaolin
collection PubMed
description As an important timber genus with high economic and ecological values, Populus is a model for dissecting the genetic architecture of growth traits in perennial forest trees. However, the genetic mechanisms of longitudinal growth traits in poplar remain incompletely understood. In this study, we conducted longitudinal genetic analysis of height and diameter at breast height (DBH) in eleven-year poplar clones using ultra-deep sequencing datasets. We compared four S-shaped growth models, including asymptotic, Gompertz, logistic, and Richard, on eleven-year height and DBH records in terms of five metrics. We constructed the best-fitting growth model (Richard) and determined poplar ontogenetic stages by virtue of growth curve fitting and likelihood ratio testing. This study provides some scientific clues for temporal variation of longitudinal growth traits in Populus species.
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spelling pubmed-106709232023-11-10 Analysis of Growth Trajectories and Verification of Related SNPs in Populus deltoides Wang, Yaolin Wang, Zesen Zhu, Sheng Pan, Huixin Ding, Changjun Xu, Meng Int J Mol Sci Article As an important timber genus with high economic and ecological values, Populus is a model for dissecting the genetic architecture of growth traits in perennial forest trees. However, the genetic mechanisms of longitudinal growth traits in poplar remain incompletely understood. In this study, we conducted longitudinal genetic analysis of height and diameter at breast height (DBH) in eleven-year poplar clones using ultra-deep sequencing datasets. We compared four S-shaped growth models, including asymptotic, Gompertz, logistic, and Richard, on eleven-year height and DBH records in terms of five metrics. We constructed the best-fitting growth model (Richard) and determined poplar ontogenetic stages by virtue of growth curve fitting and likelihood ratio testing. This study provides some scientific clues for temporal variation of longitudinal growth traits in Populus species. MDPI 2023-11-10 /pmc/articles/PMC10670923/ /pubmed/38003382 http://dx.doi.org/10.3390/ijms242216192 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Wang, Yaolin
Wang, Zesen
Zhu, Sheng
Pan, Huixin
Ding, Changjun
Xu, Meng
Analysis of Growth Trajectories and Verification of Related SNPs in Populus deltoides
title Analysis of Growth Trajectories and Verification of Related SNPs in Populus deltoides
title_full Analysis of Growth Trajectories and Verification of Related SNPs in Populus deltoides
title_fullStr Analysis of Growth Trajectories and Verification of Related SNPs in Populus deltoides
title_full_unstemmed Analysis of Growth Trajectories and Verification of Related SNPs in Populus deltoides
title_short Analysis of Growth Trajectories and Verification of Related SNPs in Populus deltoides
title_sort analysis of growth trajectories and verification of related snps in populus deltoides
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10670923/
https://www.ncbi.nlm.nih.gov/pubmed/38003382
http://dx.doi.org/10.3390/ijms242216192
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