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Comparative Transcriptomic Analysis of Largemouth Bass (Micropterus salmoides) Livers Reveals Response Mechanisms to High Temperatures
High temperatures are considered one of the most significant limitations to subtropical fishery production. Largemouth bass (Micropterus salmoides) is an economically important freshwater species grown in subtropical areas, which are extremely sensitive to heat stress (HS). However, comprehensive tr...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10671503/ https://www.ncbi.nlm.nih.gov/pubmed/38003039 http://dx.doi.org/10.3390/genes14112096 |
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author | Zhou, Fan Qi, Ming Li, Jiapeng Huang, Yuanfei Chen, Xiaoming Liu, Wei Yao, Gaohua Meng, Qinghui Zheng, Tianlun Wang, Zhanqi Ding, Xueyan |
author_facet | Zhou, Fan Qi, Ming Li, Jiapeng Huang, Yuanfei Chen, Xiaoming Liu, Wei Yao, Gaohua Meng, Qinghui Zheng, Tianlun Wang, Zhanqi Ding, Xueyan |
author_sort | Zhou, Fan |
collection | PubMed |
description | High temperatures are considered one of the most significant limitations to subtropical fishery production. Largemouth bass (Micropterus salmoides) is an economically important freshwater species grown in subtropical areas, which are extremely sensitive to heat stress (HS). However, comprehensive transcriptomic data for the livers of largemouth bass in response to HS are still lacking. In this study, a comparative transcriptomic analysis was performed to investigate the gene expression profiles of the livers of largemouth bass under HS treatment. As a result, 6114 significantly differentially expressed genes (DEGs), which included 2645 up-regulated and 3469 down-regulated genes, were identified in response to HS. Bioinformatics analyses demonstrated that the ‘ECM-receptor interaction’ pathway was one of the most dramatically changed pathways in response to HS, and eight DEGs assigned to this pathway were taken as hub genes. Furthermore, the expression of these eight hub genes was determined by quantitative reverse transcription PCR, and all of them showed a significant change at the transcriptional level, suggesting a crucial role of the ‘ECM-receptor interaction’ pathway in the response of largemouth bass to HS. These findings may improve our understanding of the molecular mechanisms underlying the response of largemouth bass to HS. |
format | Online Article Text |
id | pubmed-10671503 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-106715032023-11-17 Comparative Transcriptomic Analysis of Largemouth Bass (Micropterus salmoides) Livers Reveals Response Mechanisms to High Temperatures Zhou, Fan Qi, Ming Li, Jiapeng Huang, Yuanfei Chen, Xiaoming Liu, Wei Yao, Gaohua Meng, Qinghui Zheng, Tianlun Wang, Zhanqi Ding, Xueyan Genes (Basel) Article High temperatures are considered one of the most significant limitations to subtropical fishery production. Largemouth bass (Micropterus salmoides) is an economically important freshwater species grown in subtropical areas, which are extremely sensitive to heat stress (HS). However, comprehensive transcriptomic data for the livers of largemouth bass in response to HS are still lacking. In this study, a comparative transcriptomic analysis was performed to investigate the gene expression profiles of the livers of largemouth bass under HS treatment. As a result, 6114 significantly differentially expressed genes (DEGs), which included 2645 up-regulated and 3469 down-regulated genes, were identified in response to HS. Bioinformatics analyses demonstrated that the ‘ECM-receptor interaction’ pathway was one of the most dramatically changed pathways in response to HS, and eight DEGs assigned to this pathway were taken as hub genes. Furthermore, the expression of these eight hub genes was determined by quantitative reverse transcription PCR, and all of them showed a significant change at the transcriptional level, suggesting a crucial role of the ‘ECM-receptor interaction’ pathway in the response of largemouth bass to HS. These findings may improve our understanding of the molecular mechanisms underlying the response of largemouth bass to HS. MDPI 2023-11-17 /pmc/articles/PMC10671503/ /pubmed/38003039 http://dx.doi.org/10.3390/genes14112096 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Zhou, Fan Qi, Ming Li, Jiapeng Huang, Yuanfei Chen, Xiaoming Liu, Wei Yao, Gaohua Meng, Qinghui Zheng, Tianlun Wang, Zhanqi Ding, Xueyan Comparative Transcriptomic Analysis of Largemouth Bass (Micropterus salmoides) Livers Reveals Response Mechanisms to High Temperatures |
title | Comparative Transcriptomic Analysis of Largemouth Bass (Micropterus salmoides) Livers Reveals Response Mechanisms to High Temperatures |
title_full | Comparative Transcriptomic Analysis of Largemouth Bass (Micropterus salmoides) Livers Reveals Response Mechanisms to High Temperatures |
title_fullStr | Comparative Transcriptomic Analysis of Largemouth Bass (Micropterus salmoides) Livers Reveals Response Mechanisms to High Temperatures |
title_full_unstemmed | Comparative Transcriptomic Analysis of Largemouth Bass (Micropterus salmoides) Livers Reveals Response Mechanisms to High Temperatures |
title_short | Comparative Transcriptomic Analysis of Largemouth Bass (Micropterus salmoides) Livers Reveals Response Mechanisms to High Temperatures |
title_sort | comparative transcriptomic analysis of largemouth bass (micropterus salmoides) livers reveals response mechanisms to high temperatures |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10671503/ https://www.ncbi.nlm.nih.gov/pubmed/38003039 http://dx.doi.org/10.3390/genes14112096 |
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