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Domain-Aware Few-Shot Learning for Optical Coherence Tomography Noise Reduction

Speckle noise has long been an extensively studied problem in medical imaging. In recent years, there have been significant advances in leveraging deep learning methods for noise reduction. Nevertheless, adaptation of supervised learning models to unseen domains remains a challenging problem. Specif...

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Detalles Bibliográficos
Autor principal: Pereg, Deborah
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10672362/
https://www.ncbi.nlm.nih.gov/pubmed/37998084
http://dx.doi.org/10.3390/jimaging9110237
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author Pereg, Deborah
author_facet Pereg, Deborah
author_sort Pereg, Deborah
collection PubMed
description Speckle noise has long been an extensively studied problem in medical imaging. In recent years, there have been significant advances in leveraging deep learning methods for noise reduction. Nevertheless, adaptation of supervised learning models to unseen domains remains a challenging problem. Specifically, deep neural networks (DNNs) trained for computational imaging tasks are vulnerable to changes in the acquisition system’s physical parameters, such as: sampling space, resolution, and contrast. Even within the same acquisition system, performance degrades across datasets of different biological tissues. In this work, we propose a few-shot supervised learning framework for optical coherence tomography (OCT) noise reduction, that offers high-speed training (of the order of seconds) and requires only a single image, or part of an image, and a corresponding speckle-suppressed ground truth, for training. Furthermore, we formulate the domain shift problem for OCT diverse imaging systems and prove that the output resolution of a despeckling trained model is determined by the source domain resolution. We also provide possible remedies. We propose different practical implementations of our approach, verify and compare their applicability, robustness, and computational efficiency. Our results demonstrate the potential to improve sample complexity, generalization, and time efficiency, for coherent and non-coherent noise reduction via supervised learning models, that can also be leveraged for other real-time computer vision applications.
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spelling pubmed-106723622023-10-30 Domain-Aware Few-Shot Learning for Optical Coherence Tomography Noise Reduction Pereg, Deborah J Imaging Article Speckle noise has long been an extensively studied problem in medical imaging. In recent years, there have been significant advances in leveraging deep learning methods for noise reduction. Nevertheless, adaptation of supervised learning models to unseen domains remains a challenging problem. Specifically, deep neural networks (DNNs) trained for computational imaging tasks are vulnerable to changes in the acquisition system’s physical parameters, such as: sampling space, resolution, and contrast. Even within the same acquisition system, performance degrades across datasets of different biological tissues. In this work, we propose a few-shot supervised learning framework for optical coherence tomography (OCT) noise reduction, that offers high-speed training (of the order of seconds) and requires only a single image, or part of an image, and a corresponding speckle-suppressed ground truth, for training. Furthermore, we formulate the domain shift problem for OCT diverse imaging systems and prove that the output resolution of a despeckling trained model is determined by the source domain resolution. We also provide possible remedies. We propose different practical implementations of our approach, verify and compare their applicability, robustness, and computational efficiency. Our results demonstrate the potential to improve sample complexity, generalization, and time efficiency, for coherent and non-coherent noise reduction via supervised learning models, that can also be leveraged for other real-time computer vision applications. MDPI 2023-10-30 /pmc/articles/PMC10672362/ /pubmed/37998084 http://dx.doi.org/10.3390/jimaging9110237 Text en © 2023 by the author. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Pereg, Deborah
Domain-Aware Few-Shot Learning for Optical Coherence Tomography Noise Reduction
title Domain-Aware Few-Shot Learning for Optical Coherence Tomography Noise Reduction
title_full Domain-Aware Few-Shot Learning for Optical Coherence Tomography Noise Reduction
title_fullStr Domain-Aware Few-Shot Learning for Optical Coherence Tomography Noise Reduction
title_full_unstemmed Domain-Aware Few-Shot Learning for Optical Coherence Tomography Noise Reduction
title_short Domain-Aware Few-Shot Learning for Optical Coherence Tomography Noise Reduction
title_sort domain-aware few-shot learning for optical coherence tomography noise reduction
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10672362/
https://www.ncbi.nlm.nih.gov/pubmed/37998084
http://dx.doi.org/10.3390/jimaging9110237
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