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One-Pot Formation of Pairing Proto-RNA Nucleotides and Their Supramolecular Assemblies

Most contemporary theories for the chemical origins of life include the prebiotic synthesis of informational polymers, including strong interpretations of the RNA World hypothesis. Existing challenges to the prebiotic emergence of RNA have encouraged exploration of the possibility that RNA was prece...

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Autores principales: Roche, Tyler P., Nedumpurath, Pranav J., Karunakaran, Suneesh C., Schuster, Gary B., Hud, Nicholas V.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10672710/
https://www.ncbi.nlm.nih.gov/pubmed/38004340
http://dx.doi.org/10.3390/life13112200
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author Roche, Tyler P.
Nedumpurath, Pranav J.
Karunakaran, Suneesh C.
Schuster, Gary B.
Hud, Nicholas V.
author_facet Roche, Tyler P.
Nedumpurath, Pranav J.
Karunakaran, Suneesh C.
Schuster, Gary B.
Hud, Nicholas V.
author_sort Roche, Tyler P.
collection PubMed
description Most contemporary theories for the chemical origins of life include the prebiotic synthesis of informational polymers, including strong interpretations of the RNA World hypothesis. Existing challenges to the prebiotic emergence of RNA have encouraged exploration of the possibility that RNA was preceded by an ancestral informational polymer, or proto-RNA, that formed more easily on the early Earth. We have proposed that the proto-nucleobases of proto-RNA would have readily formed glycosides with ribose and that these proto-nucleosides would have formed base pairs as monomers in aqueous solution, two properties not exhibited by the extant nucleosides or nucleotides. Here we demonstrate that putative proto-nucleotides of the model proto-nucleobases barbituric acid and melamine can be formed in the same one-pot reaction with ribose-5-phosphate. Additionally, the proto-nucleotides formed in these reactions spontaneously form assemblies that are consistent with the presence of Watson–Crick-like base pairs. Together, these results provide further support for the possibility that heterocycles closely related to the extant bases of RNA facilitated the prebiotic emergence of RNA-like molecules, which were eventually replaced by RNA over the course of chemical and biological evolution.
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spelling pubmed-106727102023-11-12 One-Pot Formation of Pairing Proto-RNA Nucleotides and Their Supramolecular Assemblies Roche, Tyler P. Nedumpurath, Pranav J. Karunakaran, Suneesh C. Schuster, Gary B. Hud, Nicholas V. Life (Basel) Communication Most contemporary theories for the chemical origins of life include the prebiotic synthesis of informational polymers, including strong interpretations of the RNA World hypothesis. Existing challenges to the prebiotic emergence of RNA have encouraged exploration of the possibility that RNA was preceded by an ancestral informational polymer, or proto-RNA, that formed more easily on the early Earth. We have proposed that the proto-nucleobases of proto-RNA would have readily formed glycosides with ribose and that these proto-nucleosides would have formed base pairs as monomers in aqueous solution, two properties not exhibited by the extant nucleosides or nucleotides. Here we demonstrate that putative proto-nucleotides of the model proto-nucleobases barbituric acid and melamine can be formed in the same one-pot reaction with ribose-5-phosphate. Additionally, the proto-nucleotides formed in these reactions spontaneously form assemblies that are consistent with the presence of Watson–Crick-like base pairs. Together, these results provide further support for the possibility that heterocycles closely related to the extant bases of RNA facilitated the prebiotic emergence of RNA-like molecules, which were eventually replaced by RNA over the course of chemical and biological evolution. MDPI 2023-11-12 /pmc/articles/PMC10672710/ /pubmed/38004340 http://dx.doi.org/10.3390/life13112200 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Communication
Roche, Tyler P.
Nedumpurath, Pranav J.
Karunakaran, Suneesh C.
Schuster, Gary B.
Hud, Nicholas V.
One-Pot Formation of Pairing Proto-RNA Nucleotides and Their Supramolecular Assemblies
title One-Pot Formation of Pairing Proto-RNA Nucleotides and Their Supramolecular Assemblies
title_full One-Pot Formation of Pairing Proto-RNA Nucleotides and Their Supramolecular Assemblies
title_fullStr One-Pot Formation of Pairing Proto-RNA Nucleotides and Their Supramolecular Assemblies
title_full_unstemmed One-Pot Formation of Pairing Proto-RNA Nucleotides and Their Supramolecular Assemblies
title_short One-Pot Formation of Pairing Proto-RNA Nucleotides and Their Supramolecular Assemblies
title_sort one-pot formation of pairing proto-rna nucleotides and their supramolecular assemblies
topic Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10672710/
https://www.ncbi.nlm.nih.gov/pubmed/38004340
http://dx.doi.org/10.3390/life13112200
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