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Advances in Computational Approaches for Estimating Passive Permeability in Drug Discovery
Passive permeation of cellular membranes is a key feature of many therapeutics. The relevance of passive permeability spans all biological systems as they all employ biomembranes for compartmentalization. A variety of computational techniques are currently utilized and under active development to fa...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10673305/ https://www.ncbi.nlm.nih.gov/pubmed/37999336 http://dx.doi.org/10.3390/membranes13110851 |
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author | Bernardi, Austen Bennett, W. F. Drew He, Stewart Jones, Derek Kirshner, Dan Bennion, Brian J. Carpenter, Timothy S. |
author_facet | Bernardi, Austen Bennett, W. F. Drew He, Stewart Jones, Derek Kirshner, Dan Bennion, Brian J. Carpenter, Timothy S. |
author_sort | Bernardi, Austen |
collection | PubMed |
description | Passive permeation of cellular membranes is a key feature of many therapeutics. The relevance of passive permeability spans all biological systems as they all employ biomembranes for compartmentalization. A variety of computational techniques are currently utilized and under active development to facilitate the characterization of passive permeability. These methods include lipophilicity relations, molecular dynamics simulations, and machine learning, which vary in accuracy, complexity, and computational cost. This review briefly introduces the underlying theories, such as the prominent inhomogeneous solubility diffusion model, and covers a number of recent applications. Various machine-learning applications, which have demonstrated good potential for high-volume, data-driven permeability predictions, are also discussed. Due to the confluence of novel computational methods and next-generation exascale computers, we anticipate an exciting future for computationally driven permeability predictions. |
format | Online Article Text |
id | pubmed-10673305 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-106733052023-10-25 Advances in Computational Approaches for Estimating Passive Permeability in Drug Discovery Bernardi, Austen Bennett, W. F. Drew He, Stewart Jones, Derek Kirshner, Dan Bennion, Brian J. Carpenter, Timothy S. Membranes (Basel) Review Passive permeation of cellular membranes is a key feature of many therapeutics. The relevance of passive permeability spans all biological systems as they all employ biomembranes for compartmentalization. A variety of computational techniques are currently utilized and under active development to facilitate the characterization of passive permeability. These methods include lipophilicity relations, molecular dynamics simulations, and machine learning, which vary in accuracy, complexity, and computational cost. This review briefly introduces the underlying theories, such as the prominent inhomogeneous solubility diffusion model, and covers a number of recent applications. Various machine-learning applications, which have demonstrated good potential for high-volume, data-driven permeability predictions, are also discussed. Due to the confluence of novel computational methods and next-generation exascale computers, we anticipate an exciting future for computationally driven permeability predictions. MDPI 2023-10-25 /pmc/articles/PMC10673305/ /pubmed/37999336 http://dx.doi.org/10.3390/membranes13110851 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Review Bernardi, Austen Bennett, W. F. Drew He, Stewart Jones, Derek Kirshner, Dan Bennion, Brian J. Carpenter, Timothy S. Advances in Computational Approaches for Estimating Passive Permeability in Drug Discovery |
title | Advances in Computational Approaches for Estimating Passive Permeability in Drug Discovery |
title_full | Advances in Computational Approaches for Estimating Passive Permeability in Drug Discovery |
title_fullStr | Advances in Computational Approaches for Estimating Passive Permeability in Drug Discovery |
title_full_unstemmed | Advances in Computational Approaches for Estimating Passive Permeability in Drug Discovery |
title_short | Advances in Computational Approaches for Estimating Passive Permeability in Drug Discovery |
title_sort | advances in computational approaches for estimating passive permeability in drug discovery |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10673305/ https://www.ncbi.nlm.nih.gov/pubmed/37999336 http://dx.doi.org/10.3390/membranes13110851 |
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