Cargando…

Advances in Computational Approaches for Estimating Passive Permeability in Drug Discovery

Passive permeation of cellular membranes is a key feature of many therapeutics. The relevance of passive permeability spans all biological systems as they all employ biomembranes for compartmentalization. A variety of computational techniques are currently utilized and under active development to fa...

Descripción completa

Detalles Bibliográficos
Autores principales: Bernardi, Austen, Bennett, W. F. Drew, He, Stewart, Jones, Derek, Kirshner, Dan, Bennion, Brian J., Carpenter, Timothy S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10673305/
https://www.ncbi.nlm.nih.gov/pubmed/37999336
http://dx.doi.org/10.3390/membranes13110851
_version_ 1785140591434137600
author Bernardi, Austen
Bennett, W. F. Drew
He, Stewart
Jones, Derek
Kirshner, Dan
Bennion, Brian J.
Carpenter, Timothy S.
author_facet Bernardi, Austen
Bennett, W. F. Drew
He, Stewart
Jones, Derek
Kirshner, Dan
Bennion, Brian J.
Carpenter, Timothy S.
author_sort Bernardi, Austen
collection PubMed
description Passive permeation of cellular membranes is a key feature of many therapeutics. The relevance of passive permeability spans all biological systems as they all employ biomembranes for compartmentalization. A variety of computational techniques are currently utilized and under active development to facilitate the characterization of passive permeability. These methods include lipophilicity relations, molecular dynamics simulations, and machine learning, which vary in accuracy, complexity, and computational cost. This review briefly introduces the underlying theories, such as the prominent inhomogeneous solubility diffusion model, and covers a number of recent applications. Various machine-learning applications, which have demonstrated good potential for high-volume, data-driven permeability predictions, are also discussed. Due to the confluence of novel computational methods and next-generation exascale computers, we anticipate an exciting future for computationally driven permeability predictions.
format Online
Article
Text
id pubmed-10673305
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-106733052023-10-25 Advances in Computational Approaches for Estimating Passive Permeability in Drug Discovery Bernardi, Austen Bennett, W. F. Drew He, Stewart Jones, Derek Kirshner, Dan Bennion, Brian J. Carpenter, Timothy S. Membranes (Basel) Review Passive permeation of cellular membranes is a key feature of many therapeutics. The relevance of passive permeability spans all biological systems as they all employ biomembranes for compartmentalization. A variety of computational techniques are currently utilized and under active development to facilitate the characterization of passive permeability. These methods include lipophilicity relations, molecular dynamics simulations, and machine learning, which vary in accuracy, complexity, and computational cost. This review briefly introduces the underlying theories, such as the prominent inhomogeneous solubility diffusion model, and covers a number of recent applications. Various machine-learning applications, which have demonstrated good potential for high-volume, data-driven permeability predictions, are also discussed. Due to the confluence of novel computational methods and next-generation exascale computers, we anticipate an exciting future for computationally driven permeability predictions. MDPI 2023-10-25 /pmc/articles/PMC10673305/ /pubmed/37999336 http://dx.doi.org/10.3390/membranes13110851 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Bernardi, Austen
Bennett, W. F. Drew
He, Stewart
Jones, Derek
Kirshner, Dan
Bennion, Brian J.
Carpenter, Timothy S.
Advances in Computational Approaches for Estimating Passive Permeability in Drug Discovery
title Advances in Computational Approaches for Estimating Passive Permeability in Drug Discovery
title_full Advances in Computational Approaches for Estimating Passive Permeability in Drug Discovery
title_fullStr Advances in Computational Approaches for Estimating Passive Permeability in Drug Discovery
title_full_unstemmed Advances in Computational Approaches for Estimating Passive Permeability in Drug Discovery
title_short Advances in Computational Approaches for Estimating Passive Permeability in Drug Discovery
title_sort advances in computational approaches for estimating passive permeability in drug discovery
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10673305/
https://www.ncbi.nlm.nih.gov/pubmed/37999336
http://dx.doi.org/10.3390/membranes13110851
work_keys_str_mv AT bernardiausten advancesincomputationalapproachesforestimatingpassivepermeabilityindrugdiscovery
AT bennettwfdrew advancesincomputationalapproachesforestimatingpassivepermeabilityindrugdiscovery
AT hestewart advancesincomputationalapproachesforestimatingpassivepermeabilityindrugdiscovery
AT jonesderek advancesincomputationalapproachesforestimatingpassivepermeabilityindrugdiscovery
AT kirshnerdan advancesincomputationalapproachesforestimatingpassivepermeabilityindrugdiscovery
AT bennionbrianj advancesincomputationalapproachesforestimatingpassivepermeabilityindrugdiscovery
AT carpentertimothys advancesincomputationalapproachesforestimatingpassivepermeabilityindrugdiscovery