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Genome-Wide Identification and Analysis of the EPF Gene Family in Sorghum bicolor (L.) Moench
The EPIDERMAL PATTERNING FACTOR (EPF) plays a crucial role in plant response to abiotic stress. While the EPF has been extensively studied in model plants such as Arabidopsis thaliana, there is a lack of research on identifying EPF genes in the whole sorghum genome and its response to drought stress...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10674733/ https://www.ncbi.nlm.nih.gov/pubmed/38005809 http://dx.doi.org/10.3390/plants12223912 |
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author | Jiao, Zhiyin Wang, Jinping Shi, Yannan Wang, Zhifang Zhang, Jing Du, Qi Liu, Bocheng Jia, Xinyue Niu, Jingtian Gu, Chun Lv, Peng |
author_facet | Jiao, Zhiyin Wang, Jinping Shi, Yannan Wang, Zhifang Zhang, Jing Du, Qi Liu, Bocheng Jia, Xinyue Niu, Jingtian Gu, Chun Lv, Peng |
author_sort | Jiao, Zhiyin |
collection | PubMed |
description | The EPIDERMAL PATTERNING FACTOR (EPF) plays a crucial role in plant response to abiotic stress. While the EPF has been extensively studied in model plants such as Arabidopsis thaliana, there is a lack of research on identifying EPF genes in the whole sorghum genome and its response to drought stress. In this study, we employed bioinformatics tools to identify 12 EPF members in sorghum. Phylogenetic tree analysis revealed that SbEPFs can be categorized into four branches. Further examination of the gene structure and protein conservation motifs of EPF family members demonstrated the high conservation of the SbEPF sequence. The promoter region of SbEPFs was found to encompass cis-elements responsive to stress and plant hormones. Moreover, real-time fluorescence quantitative results indicated that the SbEPFs have a tissue-specific expression. Under drought stress treatment, most SbEPF members were significantly up-regulated, indicating their potential role in drought response. Our research findings establish a foundation for investigating the function of SbEPFs and offer candidate genes for stress-resistant breeding and enhanced production in sorghum. |
format | Online Article Text |
id | pubmed-10674733 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-106747332023-11-20 Genome-Wide Identification and Analysis of the EPF Gene Family in Sorghum bicolor (L.) Moench Jiao, Zhiyin Wang, Jinping Shi, Yannan Wang, Zhifang Zhang, Jing Du, Qi Liu, Bocheng Jia, Xinyue Niu, Jingtian Gu, Chun Lv, Peng Plants (Basel) Article The EPIDERMAL PATTERNING FACTOR (EPF) plays a crucial role in plant response to abiotic stress. While the EPF has been extensively studied in model plants such as Arabidopsis thaliana, there is a lack of research on identifying EPF genes in the whole sorghum genome and its response to drought stress. In this study, we employed bioinformatics tools to identify 12 EPF members in sorghum. Phylogenetic tree analysis revealed that SbEPFs can be categorized into four branches. Further examination of the gene structure and protein conservation motifs of EPF family members demonstrated the high conservation of the SbEPF sequence. The promoter region of SbEPFs was found to encompass cis-elements responsive to stress and plant hormones. Moreover, real-time fluorescence quantitative results indicated that the SbEPFs have a tissue-specific expression. Under drought stress treatment, most SbEPF members were significantly up-regulated, indicating their potential role in drought response. Our research findings establish a foundation for investigating the function of SbEPFs and offer candidate genes for stress-resistant breeding and enhanced production in sorghum. MDPI 2023-11-20 /pmc/articles/PMC10674733/ /pubmed/38005809 http://dx.doi.org/10.3390/plants12223912 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Jiao, Zhiyin Wang, Jinping Shi, Yannan Wang, Zhifang Zhang, Jing Du, Qi Liu, Bocheng Jia, Xinyue Niu, Jingtian Gu, Chun Lv, Peng Genome-Wide Identification and Analysis of the EPF Gene Family in Sorghum bicolor (L.) Moench |
title | Genome-Wide Identification and Analysis of the EPF Gene Family in Sorghum bicolor (L.) Moench |
title_full | Genome-Wide Identification and Analysis of the EPF Gene Family in Sorghum bicolor (L.) Moench |
title_fullStr | Genome-Wide Identification and Analysis of the EPF Gene Family in Sorghum bicolor (L.) Moench |
title_full_unstemmed | Genome-Wide Identification and Analysis of the EPF Gene Family in Sorghum bicolor (L.) Moench |
title_short | Genome-Wide Identification and Analysis of the EPF Gene Family in Sorghum bicolor (L.) Moench |
title_sort | genome-wide identification and analysis of the epf gene family in sorghum bicolor (l.) moench |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10674733/ https://www.ncbi.nlm.nih.gov/pubmed/38005809 http://dx.doi.org/10.3390/plants12223912 |
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