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Genome-Wide Identification and Analysis of the EPF Gene Family in Sorghum bicolor (L.) Moench

The EPIDERMAL PATTERNING FACTOR (EPF) plays a crucial role in plant response to abiotic stress. While the EPF has been extensively studied in model plants such as Arabidopsis thaliana, there is a lack of research on identifying EPF genes in the whole sorghum genome and its response to drought stress...

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Autores principales: Jiao, Zhiyin, Wang, Jinping, Shi, Yannan, Wang, Zhifang, Zhang, Jing, Du, Qi, Liu, Bocheng, Jia, Xinyue, Niu, Jingtian, Gu, Chun, Lv, Peng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10674733/
https://www.ncbi.nlm.nih.gov/pubmed/38005809
http://dx.doi.org/10.3390/plants12223912
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author Jiao, Zhiyin
Wang, Jinping
Shi, Yannan
Wang, Zhifang
Zhang, Jing
Du, Qi
Liu, Bocheng
Jia, Xinyue
Niu, Jingtian
Gu, Chun
Lv, Peng
author_facet Jiao, Zhiyin
Wang, Jinping
Shi, Yannan
Wang, Zhifang
Zhang, Jing
Du, Qi
Liu, Bocheng
Jia, Xinyue
Niu, Jingtian
Gu, Chun
Lv, Peng
author_sort Jiao, Zhiyin
collection PubMed
description The EPIDERMAL PATTERNING FACTOR (EPF) plays a crucial role in plant response to abiotic stress. While the EPF has been extensively studied in model plants such as Arabidopsis thaliana, there is a lack of research on identifying EPF genes in the whole sorghum genome and its response to drought stress. In this study, we employed bioinformatics tools to identify 12 EPF members in sorghum. Phylogenetic tree analysis revealed that SbEPFs can be categorized into four branches. Further examination of the gene structure and protein conservation motifs of EPF family members demonstrated the high conservation of the SbEPF sequence. The promoter region of SbEPFs was found to encompass cis-elements responsive to stress and plant hormones. Moreover, real-time fluorescence quantitative results indicated that the SbEPFs have a tissue-specific expression. Under drought stress treatment, most SbEPF members were significantly up-regulated, indicating their potential role in drought response. Our research findings establish a foundation for investigating the function of SbEPFs and offer candidate genes for stress-resistant breeding and enhanced production in sorghum.
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spelling pubmed-106747332023-11-20 Genome-Wide Identification and Analysis of the EPF Gene Family in Sorghum bicolor (L.) Moench Jiao, Zhiyin Wang, Jinping Shi, Yannan Wang, Zhifang Zhang, Jing Du, Qi Liu, Bocheng Jia, Xinyue Niu, Jingtian Gu, Chun Lv, Peng Plants (Basel) Article The EPIDERMAL PATTERNING FACTOR (EPF) plays a crucial role in plant response to abiotic stress. While the EPF has been extensively studied in model plants such as Arabidopsis thaliana, there is a lack of research on identifying EPF genes in the whole sorghum genome and its response to drought stress. In this study, we employed bioinformatics tools to identify 12 EPF members in sorghum. Phylogenetic tree analysis revealed that SbEPFs can be categorized into four branches. Further examination of the gene structure and protein conservation motifs of EPF family members demonstrated the high conservation of the SbEPF sequence. The promoter region of SbEPFs was found to encompass cis-elements responsive to stress and plant hormones. Moreover, real-time fluorescence quantitative results indicated that the SbEPFs have a tissue-specific expression. Under drought stress treatment, most SbEPF members were significantly up-regulated, indicating their potential role in drought response. Our research findings establish a foundation for investigating the function of SbEPFs and offer candidate genes for stress-resistant breeding and enhanced production in sorghum. MDPI 2023-11-20 /pmc/articles/PMC10674733/ /pubmed/38005809 http://dx.doi.org/10.3390/plants12223912 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Jiao, Zhiyin
Wang, Jinping
Shi, Yannan
Wang, Zhifang
Zhang, Jing
Du, Qi
Liu, Bocheng
Jia, Xinyue
Niu, Jingtian
Gu, Chun
Lv, Peng
Genome-Wide Identification and Analysis of the EPF Gene Family in Sorghum bicolor (L.) Moench
title Genome-Wide Identification and Analysis of the EPF Gene Family in Sorghum bicolor (L.) Moench
title_full Genome-Wide Identification and Analysis of the EPF Gene Family in Sorghum bicolor (L.) Moench
title_fullStr Genome-Wide Identification and Analysis of the EPF Gene Family in Sorghum bicolor (L.) Moench
title_full_unstemmed Genome-Wide Identification and Analysis of the EPF Gene Family in Sorghum bicolor (L.) Moench
title_short Genome-Wide Identification and Analysis of the EPF Gene Family in Sorghum bicolor (L.) Moench
title_sort genome-wide identification and analysis of the epf gene family in sorghum bicolor (l.) moench
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10674733/
https://www.ncbi.nlm.nih.gov/pubmed/38005809
http://dx.doi.org/10.3390/plants12223912
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