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Chromosome-level genome assembly of Przevalski’s partridge (Alectoris magna)

Przevalski’s partridge (Alectoris magna) is one of the birds in the genus Alectoris endemic to China. The distribution of A. magna was narrow, and it was only found in parts of the Qinghai, Gansu, and Ningxia provinces. A. magna was considered a monotypic species until it was distinguished into two...

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Autores principales: Wang, Xumin, Xia, Wenhao, Teng, Xindong, Lin, Wanying, Xing, Zhikai, Wang, Shuang, Liu, Xiumei, Qu, Jiangyong, Zhao, Wei, Wang, Lijun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10676418/
https://www.ncbi.nlm.nih.gov/pubmed/38007538
http://dx.doi.org/10.1038/s41597-023-02655-5
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author Wang, Xumin
Xia, Wenhao
Teng, Xindong
Lin, Wanying
Xing, Zhikai
Wang, Shuang
Liu, Xiumei
Qu, Jiangyong
Zhao, Wei
Wang, Lijun
author_facet Wang, Xumin
Xia, Wenhao
Teng, Xindong
Lin, Wanying
Xing, Zhikai
Wang, Shuang
Liu, Xiumei
Qu, Jiangyong
Zhao, Wei
Wang, Lijun
author_sort Wang, Xumin
collection PubMed
description Przevalski’s partridge (Alectoris magna) is one of the birds in the genus Alectoris endemic to China. The distribution of A. magna was narrow, and it was only found in parts of the Qinghai, Gansu, and Ningxia provinces. A. magna was considered a monotypic species until it was distinguished into two subspecies. However, external morphological characteristics, rather than genetic differences or evolutionary relationships, are now commonly used as evidence of subspecies differentiation. In this study, a chromosome-level reference genome of A. magna has been constructed by combining Illumina, PacBio and Hi-C sequencing data. The 1135.01 Mb A. magna genome was ultimately assembled. The genome showed 96.9% completeness (BUSCO), with a contig N50 length of 23.34 Mb. The contigs were clustered and oriented on 20 chromosomes, covering approximately 99.96% of the genome assembly. Additionally, altogether 19,103 protein-coding genes were predicted, of which 95.10% were functionally annotated. This high-quality genome assembly could serve as a valuable genomic resource for future research on the functional genomics, genetic protection, and interspecific hybridization of A. magna.
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spelling pubmed-106764182023-11-25 Chromosome-level genome assembly of Przevalski’s partridge (Alectoris magna) Wang, Xumin Xia, Wenhao Teng, Xindong Lin, Wanying Xing, Zhikai Wang, Shuang Liu, Xiumei Qu, Jiangyong Zhao, Wei Wang, Lijun Sci Data Data Descriptor Przevalski’s partridge (Alectoris magna) is one of the birds in the genus Alectoris endemic to China. The distribution of A. magna was narrow, and it was only found in parts of the Qinghai, Gansu, and Ningxia provinces. A. magna was considered a monotypic species until it was distinguished into two subspecies. However, external morphological characteristics, rather than genetic differences or evolutionary relationships, are now commonly used as evidence of subspecies differentiation. In this study, a chromosome-level reference genome of A. magna has been constructed by combining Illumina, PacBio and Hi-C sequencing data. The 1135.01 Mb A. magna genome was ultimately assembled. The genome showed 96.9% completeness (BUSCO), with a contig N50 length of 23.34 Mb. The contigs were clustered and oriented on 20 chromosomes, covering approximately 99.96% of the genome assembly. Additionally, altogether 19,103 protein-coding genes were predicted, of which 95.10% were functionally annotated. This high-quality genome assembly could serve as a valuable genomic resource for future research on the functional genomics, genetic protection, and interspecific hybridization of A. magna. Nature Publishing Group UK 2023-11-25 /pmc/articles/PMC10676418/ /pubmed/38007538 http://dx.doi.org/10.1038/s41597-023-02655-5 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Wang, Xumin
Xia, Wenhao
Teng, Xindong
Lin, Wanying
Xing, Zhikai
Wang, Shuang
Liu, Xiumei
Qu, Jiangyong
Zhao, Wei
Wang, Lijun
Chromosome-level genome assembly of Przevalski’s partridge (Alectoris magna)
title Chromosome-level genome assembly of Przevalski’s partridge (Alectoris magna)
title_full Chromosome-level genome assembly of Przevalski’s partridge (Alectoris magna)
title_fullStr Chromosome-level genome assembly of Przevalski’s partridge (Alectoris magna)
title_full_unstemmed Chromosome-level genome assembly of Przevalski’s partridge (Alectoris magna)
title_short Chromosome-level genome assembly of Przevalski’s partridge (Alectoris magna)
title_sort chromosome-level genome assembly of przevalski’s partridge (alectoris magna)
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10676418/
https://www.ncbi.nlm.nih.gov/pubmed/38007538
http://dx.doi.org/10.1038/s41597-023-02655-5
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