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161. Impact of Committee-Based Diagnostic Stewardship on Performance of metagenomic Next-Generation Sequence Testing for Suspected Infections in Children

BACKGROUND: Metagenomic next generation sequencing (mNGS) is a novel, unbiased approach to identify clinically relevant microorganisms. While an increasing body of lliterature suggests the potential positive impact of mNGS testing, best–use cases remain unclear, with rates of clinically significant...

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Autores principales: Allen, Brian S, Sue, Paul K, Filkins, Laura, Teherani, Mehgan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10677022/
http://dx.doi.org/10.1093/ofid/ofad500.234
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author Allen, Brian S
Sue, Paul K
Filkins, Laura
Teherani, Mehgan
author_facet Allen, Brian S
Sue, Paul K
Filkins, Laura
Teherani, Mehgan
author_sort Allen, Brian S
collection PubMed
description BACKGROUND: Metagenomic next generation sequencing (mNGS) is a novel, unbiased approach to identify clinically relevant microorganisms. While an increasing body of lliterature suggests the potential positive impact of mNGS testing, best–use cases remain unclear, with rates of clinically significant outcomes as low as 10%. We implemented a restrictive testing model requiring pre-approval for mNGS testing via an ad-hoc committee of infectious disease specialists and pathologists, to optimize utilization of mNGS testing and aid in interpretation of results. We hypothesized that implementation of this diagnostic stewardship model would lead to higher rates of clinically actionable results. [Figure: see text] METHODS: We performed a retrospective review of mNGS requests at our institution from August 1, 2018 – April 30, 2021. Cases were evaluated by the mNGS committee within 24 hours, and following committee-provider discussion, either approved, denied as inappropriate, or denied in favor of additional conventional evaluation. Charts were subsequently reviewed and mNGS testing adjudicated as having either positive, negative, or no impact . RESULTS: 12 mNGS requests were adjudicated, with 9 subjects approved for testing. Median age of participants was 8 years, with a large proportion (67%) of immunocompromised individuals. The most common indication for mNGS testing was persistent fever (58%). All samples were collected within 24 hours of request, with a median result time of 4 days. Among the 9 approved tests, seven (67%) were deemed to be clinically significant and directly impacted care, while three (33%) resulted in no impact. In total, mNGS testing led to 7 changes in management, 3 clinically relevant organisms identified, and 2 invasive procedures avoided. No adverse outcomes were observed among the denied requests. . CONCLUSION: Plasma cell-free DNA mNGS is a promising albeit limited diagnostic tool for clinically relevant infectious diseases, and in the absence of diagnostic stewardship, may lead to unnecessary treatment and excess costs. Implementation of committee-based pre-approval and testing restriction led to high rates of clinically actionable results, and may improve the utility of mNGS testing, while neither delaying care nor negatively impacting outcomes. DISCLOSURES: Paul K. Sue, MDCM, Allovir, Inc: Participant in Industry Sponsored Trial|Gilead Sciences, Inc: Participant in Industry Sponsored Trial|Merck & Co.: Participant in Industry Sponsored Trial Laura Filkins, PhD, Avsana Labs: Board Member|Avsana Labs: Stocks/Bonds|Biofire Diagnostics: Grant/Research Support
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spelling pubmed-106770222023-11-27 161. Impact of Committee-Based Diagnostic Stewardship on Performance of metagenomic Next-Generation Sequence Testing for Suspected Infections in Children Allen, Brian S Sue, Paul K Filkins, Laura Teherani, Mehgan Open Forum Infect Dis Abstract BACKGROUND: Metagenomic next generation sequencing (mNGS) is a novel, unbiased approach to identify clinically relevant microorganisms. While an increasing body of lliterature suggests the potential positive impact of mNGS testing, best–use cases remain unclear, with rates of clinically significant outcomes as low as 10%. We implemented a restrictive testing model requiring pre-approval for mNGS testing via an ad-hoc committee of infectious disease specialists and pathologists, to optimize utilization of mNGS testing and aid in interpretation of results. We hypothesized that implementation of this diagnostic stewardship model would lead to higher rates of clinically actionable results. [Figure: see text] METHODS: We performed a retrospective review of mNGS requests at our institution from August 1, 2018 – April 30, 2021. Cases were evaluated by the mNGS committee within 24 hours, and following committee-provider discussion, either approved, denied as inappropriate, or denied in favor of additional conventional evaluation. Charts were subsequently reviewed and mNGS testing adjudicated as having either positive, negative, or no impact . RESULTS: 12 mNGS requests were adjudicated, with 9 subjects approved for testing. Median age of participants was 8 years, with a large proportion (67%) of immunocompromised individuals. The most common indication for mNGS testing was persistent fever (58%). All samples were collected within 24 hours of request, with a median result time of 4 days. Among the 9 approved tests, seven (67%) were deemed to be clinically significant and directly impacted care, while three (33%) resulted in no impact. In total, mNGS testing led to 7 changes in management, 3 clinically relevant organisms identified, and 2 invasive procedures avoided. No adverse outcomes were observed among the denied requests. . CONCLUSION: Plasma cell-free DNA mNGS is a promising albeit limited diagnostic tool for clinically relevant infectious diseases, and in the absence of diagnostic stewardship, may lead to unnecessary treatment and excess costs. Implementation of committee-based pre-approval and testing restriction led to high rates of clinically actionable results, and may improve the utility of mNGS testing, while neither delaying care nor negatively impacting outcomes. DISCLOSURES: Paul K. Sue, MDCM, Allovir, Inc: Participant in Industry Sponsored Trial|Gilead Sciences, Inc: Participant in Industry Sponsored Trial|Merck & Co.: Participant in Industry Sponsored Trial Laura Filkins, PhD, Avsana Labs: Board Member|Avsana Labs: Stocks/Bonds|Biofire Diagnostics: Grant/Research Support Oxford University Press 2023-11-27 /pmc/articles/PMC10677022/ http://dx.doi.org/10.1093/ofid/ofad500.234 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Infectious Diseases Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Abstract
Allen, Brian S
Sue, Paul K
Filkins, Laura
Teherani, Mehgan
161. Impact of Committee-Based Diagnostic Stewardship on Performance of metagenomic Next-Generation Sequence Testing for Suspected Infections in Children
title 161. Impact of Committee-Based Diagnostic Stewardship on Performance of metagenomic Next-Generation Sequence Testing for Suspected Infections in Children
title_full 161. Impact of Committee-Based Diagnostic Stewardship on Performance of metagenomic Next-Generation Sequence Testing for Suspected Infections in Children
title_fullStr 161. Impact of Committee-Based Diagnostic Stewardship on Performance of metagenomic Next-Generation Sequence Testing for Suspected Infections in Children
title_full_unstemmed 161. Impact of Committee-Based Diagnostic Stewardship on Performance of metagenomic Next-Generation Sequence Testing for Suspected Infections in Children
title_short 161. Impact of Committee-Based Diagnostic Stewardship on Performance of metagenomic Next-Generation Sequence Testing for Suspected Infections in Children
title_sort 161. impact of committee-based diagnostic stewardship on performance of metagenomic next-generation sequence testing for suspected infections in children
topic Abstract
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10677022/
http://dx.doi.org/10.1093/ofid/ofad500.234
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