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2660. Evaluating Risk for Bacterial Vaginosis Utilizing an Unsupervised Machine Learning Approach

BACKGROUND: Clustering methods using machine learning may be useful for identifying variables predicting clinical outcomes. Despite the need to better understand risk behaviors of Bacterial Vaginosis (BV), the most common cause of abnormal vaginal discharge linked to STI and HIV acquisition, machine...

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Autores principales: Rodriguez, Violeta, Pan, Yue, Salazar, Ana, Fonseca, Nicholas, Raccamarich, Patricia, Klatt, Nichole R, Weiss, Deborah Jones, Alcaide, Maria L L
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10677155/
http://dx.doi.org/10.1093/ofid/ofad500.2271
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author Rodriguez, Violeta
Pan, Yue
Salazar, Ana
Fonseca, Nicholas
Raccamarich, Patricia
Klatt, Nichole R
Weiss, Deborah Jones
Alcaide, Maria L L
author_facet Rodriguez, Violeta
Pan, Yue
Salazar, Ana
Fonseca, Nicholas
Raccamarich, Patricia
Klatt, Nichole R
Weiss, Deborah Jones
Alcaide, Maria L L
author_sort Rodriguez, Violeta
collection PubMed
description BACKGROUND: Clustering methods using machine learning may be useful for identifying variables predicting clinical outcomes. Despite the need to better understand risk behaviors of Bacterial Vaginosis (BV), the most common cause of abnormal vaginal discharge linked to STI and HIV acquisition, machine learning methods have not been used to better understand BV. This study used an unsupervised machine learning algorithm, sidClustering and random forests, to identify clusters of risk behaviors of BV. METHODS: Participants were 402 cisgender women recruited in Miami, Florida, aged 18-45 (median age=31); over half of them were black (56%) and non-Hispanic (43.8%). Participants completed measures of demographics characteristics, sexual and medical history, and intravaginal practices (IVP), and underwent collection of vaginal samples. BV was diagnosed using Amsel or Nugent criteria; abnormal vaginal flora was defined as Nugent score of 4 or above. sidClustering and random forests were used to identify clusters and the most important variables in classifying clusters associated with BV; 135 behavioral variables (including substance use and number of partners) were subjected to analysis. RESULTS: We identified 4 clusters explained most of the variation in behaviors, and variables were ranked by importance in distinguishing these clusters. Results showed that clusters associated with BV were composed of women who 1) engaged in IVP primarily using water and fingers (Cluster 1: n = 108 (26.9%)], 2) engaged in IVP using multiple methods [water, rags, etc.; Cluster 2: n = 127 (31.6%)]; 3) engaged in a combination of IVP and other risk behaviors [Cluster 3: n = 119 (29.6%)]; and 4) those who did not engage in IVP but engaged in other high-risk behaviors [Cluster 4; n = 48 (11.9%)]. Clusters were related to abnormal vaginal flora (p < .001). Cluster 2, the cluster with most frequent IVP, had the highest prevalence of BV (64.9%, compared with Cluster 1 (38.0%), Cluster 3 (50.4%), and Cluster 4 (39.6%). CONCLUSION: Machine learning methods may be particularly useful in identifying specific clusters of high-risk behaviors, and in developing interventions intended to reduce BV and IVP, and ultimately to reduce the risk of HIV infection among women. DISCLOSURES: Maria L L. Alcaide, MD, Discidium Biosciences: Board Member|Gilead: Honoraria|Merk & Co: Honoraria|Senhwa Biosciences: Honoraria|Virology Education: Honoraria
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spelling pubmed-106771552023-11-27 2660. Evaluating Risk for Bacterial Vaginosis Utilizing an Unsupervised Machine Learning Approach Rodriguez, Violeta Pan, Yue Salazar, Ana Fonseca, Nicholas Raccamarich, Patricia Klatt, Nichole R Weiss, Deborah Jones Alcaide, Maria L L Open Forum Infect Dis Abstract BACKGROUND: Clustering methods using machine learning may be useful for identifying variables predicting clinical outcomes. Despite the need to better understand risk behaviors of Bacterial Vaginosis (BV), the most common cause of abnormal vaginal discharge linked to STI and HIV acquisition, machine learning methods have not been used to better understand BV. This study used an unsupervised machine learning algorithm, sidClustering and random forests, to identify clusters of risk behaviors of BV. METHODS: Participants were 402 cisgender women recruited in Miami, Florida, aged 18-45 (median age=31); over half of them were black (56%) and non-Hispanic (43.8%). Participants completed measures of demographics characteristics, sexual and medical history, and intravaginal practices (IVP), and underwent collection of vaginal samples. BV was diagnosed using Amsel or Nugent criteria; abnormal vaginal flora was defined as Nugent score of 4 or above. sidClustering and random forests were used to identify clusters and the most important variables in classifying clusters associated with BV; 135 behavioral variables (including substance use and number of partners) were subjected to analysis. RESULTS: We identified 4 clusters explained most of the variation in behaviors, and variables were ranked by importance in distinguishing these clusters. Results showed that clusters associated with BV were composed of women who 1) engaged in IVP primarily using water and fingers (Cluster 1: n = 108 (26.9%)], 2) engaged in IVP using multiple methods [water, rags, etc.; Cluster 2: n = 127 (31.6%)]; 3) engaged in a combination of IVP and other risk behaviors [Cluster 3: n = 119 (29.6%)]; and 4) those who did not engage in IVP but engaged in other high-risk behaviors [Cluster 4; n = 48 (11.9%)]. Clusters were related to abnormal vaginal flora (p < .001). Cluster 2, the cluster with most frequent IVP, had the highest prevalence of BV (64.9%, compared with Cluster 1 (38.0%), Cluster 3 (50.4%), and Cluster 4 (39.6%). CONCLUSION: Machine learning methods may be particularly useful in identifying specific clusters of high-risk behaviors, and in developing interventions intended to reduce BV and IVP, and ultimately to reduce the risk of HIV infection among women. DISCLOSURES: Maria L L. Alcaide, MD, Discidium Biosciences: Board Member|Gilead: Honoraria|Merk & Co: Honoraria|Senhwa Biosciences: Honoraria|Virology Education: Honoraria Oxford University Press 2023-11-27 /pmc/articles/PMC10677155/ http://dx.doi.org/10.1093/ofid/ofad500.2271 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Infectious Diseases Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Abstract
Rodriguez, Violeta
Pan, Yue
Salazar, Ana
Fonseca, Nicholas
Raccamarich, Patricia
Klatt, Nichole R
Weiss, Deborah Jones
Alcaide, Maria L L
2660. Evaluating Risk for Bacterial Vaginosis Utilizing an Unsupervised Machine Learning Approach
title 2660. Evaluating Risk for Bacterial Vaginosis Utilizing an Unsupervised Machine Learning Approach
title_full 2660. Evaluating Risk for Bacterial Vaginosis Utilizing an Unsupervised Machine Learning Approach
title_fullStr 2660. Evaluating Risk for Bacterial Vaginosis Utilizing an Unsupervised Machine Learning Approach
title_full_unstemmed 2660. Evaluating Risk for Bacterial Vaginosis Utilizing an Unsupervised Machine Learning Approach
title_short 2660. Evaluating Risk for Bacterial Vaginosis Utilizing an Unsupervised Machine Learning Approach
title_sort 2660. evaluating risk for bacterial vaginosis utilizing an unsupervised machine learning approach
topic Abstract
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10677155/
http://dx.doi.org/10.1093/ofid/ofad500.2271
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