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2469. Comparative Genomics Uncovers Strain Diversity and Possible Unrecognized Transmission of MDROs among Hospitalized Patients

BACKGROUND: Contamination of the healthcare environment by colonized patients is an important source of multidrug-resistant organism (MDRO) transmission. We aimed to determine MDRO room contamination of patients with MDRO clinical cultures to test diversity of dominant strains in colonizing isolates...

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Autores principales: Koundakjian, Dylan, Strudwick, Amanda F, Page, Alex, Van Riel, Julia, Gooden, D’Ante, Satola, Sarah W, Bombin, Andrei, Read, Timothy D, Jacob, Jesse T, Babiker, Ahmed, Woodworth, Michael H
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10677321/
http://dx.doi.org/10.1093/ofid/ofad500.2087
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author Koundakjian, Dylan
Strudwick, Amanda F
Page, Alex
Van Riel, Julia
Gooden, D’Ante
Satola, Sarah W
Bombin, Andrei
Read, Timothy D
Jacob, Jesse T
Babiker, Ahmed
Woodworth, Michael H
author_facet Koundakjian, Dylan
Strudwick, Amanda F
Page, Alex
Van Riel, Julia
Gooden, D’Ante
Satola, Sarah W
Bombin, Andrei
Read, Timothy D
Jacob, Jesse T
Babiker, Ahmed
Woodworth, Michael H
author_sort Koundakjian, Dylan
collection PubMed
description BACKGROUND: Contamination of the healthcare environment by colonized patients is an important source of multidrug-resistant organism (MDRO) transmission. We aimed to determine MDRO room contamination of patients with MDRO clinical cultures to test diversity of dominant strains in colonizing isolates and detect possible transmission. METHODS: Inpatient cases with clinical cultures positive for CRE, extended-spectrum cephalosporin resistant Enterobacterales (ESCRE), CR-Pseudomonas and VRE were eligible for inclusion. Patients on the same unit without positive MDRO clinical cultures in the prior 90 days were selected as controls. Participant inguinal and perirectal sites were sampled by E-swab. Three patient room surface composites were sampled with sponge sticks on the same day. Colonies on differential and selective media were identified by MALDI-TOF with Vitek2 antimicrobial susceptibility testing. Isolates underwent genome sequencing. Clustered gene alignment and average nucleotide identity were compared for conspecific isolates. Transmission was defined as isolation of conspecific MDRO strains with > 99.9% ANI in two or more patients. RESULTS: Twelve cases and 5 controls were included. Among cases, the same clinical MDRO was detected in 91% (10/11, one patient declined sample collection) of patient-site cultures and in 42% (5/12) of environmental cultures. Among controls, an MDRO was detected in 60% (3/5) of patient samples but no MDROs were found in environmental samples. Antibiotic susceptibility was similar between conspecific patient clinical, colonizing, and environmental isolates. Among isolates sequenced, SNP analysis confirmed genetic relatedness between colonizing and invasive strains and revealed unrecognized unit-based MDRO transmission. [Figure: see text] Cases and Controls had similar clinical features [Figure: see text] [Figure: see text] Whole genome sequencing demonstrated patient colonization with multiple conspecific strains and uncovered potential unit-based transmission of colonizing isolates CONCLUSION: There is significant environmental contamination from hospitalized patients with clinical MDRO culture positivity. Whole genome sequencing demonstrated patient colonization with multiple conspecific strains and uncovered potential unit-based transmission of colonizing isolates, which may be potentiated by environmental contamination. Further research is needed to understand if reducing patient MDRO colonization could reduce environmental contamination and transmission. DISCLOSURES: Ahmed Babiker, MBBS, Roche: Advisor/Consultant
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spelling pubmed-106773212023-11-27 2469. Comparative Genomics Uncovers Strain Diversity and Possible Unrecognized Transmission of MDROs among Hospitalized Patients Koundakjian, Dylan Strudwick, Amanda F Page, Alex Van Riel, Julia Gooden, D’Ante Satola, Sarah W Bombin, Andrei Read, Timothy D Jacob, Jesse T Babiker, Ahmed Woodworth, Michael H Open Forum Infect Dis Abstract BACKGROUND: Contamination of the healthcare environment by colonized patients is an important source of multidrug-resistant organism (MDRO) transmission. We aimed to determine MDRO room contamination of patients with MDRO clinical cultures to test diversity of dominant strains in colonizing isolates and detect possible transmission. METHODS: Inpatient cases with clinical cultures positive for CRE, extended-spectrum cephalosporin resistant Enterobacterales (ESCRE), CR-Pseudomonas and VRE were eligible for inclusion. Patients on the same unit without positive MDRO clinical cultures in the prior 90 days were selected as controls. Participant inguinal and perirectal sites were sampled by E-swab. Three patient room surface composites were sampled with sponge sticks on the same day. Colonies on differential and selective media were identified by MALDI-TOF with Vitek2 antimicrobial susceptibility testing. Isolates underwent genome sequencing. Clustered gene alignment and average nucleotide identity were compared for conspecific isolates. Transmission was defined as isolation of conspecific MDRO strains with > 99.9% ANI in two or more patients. RESULTS: Twelve cases and 5 controls were included. Among cases, the same clinical MDRO was detected in 91% (10/11, one patient declined sample collection) of patient-site cultures and in 42% (5/12) of environmental cultures. Among controls, an MDRO was detected in 60% (3/5) of patient samples but no MDROs were found in environmental samples. Antibiotic susceptibility was similar between conspecific patient clinical, colonizing, and environmental isolates. Among isolates sequenced, SNP analysis confirmed genetic relatedness between colonizing and invasive strains and revealed unrecognized unit-based MDRO transmission. [Figure: see text] Cases and Controls had similar clinical features [Figure: see text] [Figure: see text] Whole genome sequencing demonstrated patient colonization with multiple conspecific strains and uncovered potential unit-based transmission of colonizing isolates CONCLUSION: There is significant environmental contamination from hospitalized patients with clinical MDRO culture positivity. Whole genome sequencing demonstrated patient colonization with multiple conspecific strains and uncovered potential unit-based transmission of colonizing isolates, which may be potentiated by environmental contamination. Further research is needed to understand if reducing patient MDRO colonization could reduce environmental contamination and transmission. DISCLOSURES: Ahmed Babiker, MBBS, Roche: Advisor/Consultant Oxford University Press 2023-11-27 /pmc/articles/PMC10677321/ http://dx.doi.org/10.1093/ofid/ofad500.2087 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Infectious Diseases Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Abstract
Koundakjian, Dylan
Strudwick, Amanda F
Page, Alex
Van Riel, Julia
Gooden, D’Ante
Satola, Sarah W
Bombin, Andrei
Read, Timothy D
Jacob, Jesse T
Babiker, Ahmed
Woodworth, Michael H
2469. Comparative Genomics Uncovers Strain Diversity and Possible Unrecognized Transmission of MDROs among Hospitalized Patients
title 2469. Comparative Genomics Uncovers Strain Diversity and Possible Unrecognized Transmission of MDROs among Hospitalized Patients
title_full 2469. Comparative Genomics Uncovers Strain Diversity and Possible Unrecognized Transmission of MDROs among Hospitalized Patients
title_fullStr 2469. Comparative Genomics Uncovers Strain Diversity and Possible Unrecognized Transmission of MDROs among Hospitalized Patients
title_full_unstemmed 2469. Comparative Genomics Uncovers Strain Diversity and Possible Unrecognized Transmission of MDROs among Hospitalized Patients
title_short 2469. Comparative Genomics Uncovers Strain Diversity and Possible Unrecognized Transmission of MDROs among Hospitalized Patients
title_sort 2469. comparative genomics uncovers strain diversity and possible unrecognized transmission of mdros among hospitalized patients
topic Abstract
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10677321/
http://dx.doi.org/10.1093/ofid/ofad500.2087
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