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558. Cost-effectiveness of Introducing Metagenomic Next-generation Sequencing (mNGS) for the Diagnosis of Suspected Respiratory Infections Patients in China

BACKGROUND: Early identification of respiratory pathogens is crucial for favorable clinical outcomes. Metagenomic next-generation sequencing (mNGS) offers an alternative approach to identify pathogens in complex clinical samples. This study aimed to assess the cost-effectiveness of using mNGS in com...

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Autores principales: Peng, Siyang, Liang, Rui, Mao, Sheng, Tang, Wen, Tang, Mi, Ai, Yaping, Wang, Junfeng, Hong, Guanqi, Qu, Shuli
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10677372/
http://dx.doi.org/10.1093/ofid/ofad500.627
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author Peng, Siyang
Liang, Rui
Mao, Sheng
Tang, Wen
Tang, Mi
Ai, Yaping
Wang, Junfeng
Hong, Guanqi
Qu, Shuli
author_facet Peng, Siyang
Liang, Rui
Mao, Sheng
Tang, Wen
Tang, Mi
Ai, Yaping
Wang, Junfeng
Hong, Guanqi
Qu, Shuli
author_sort Peng, Siyang
collection PubMed
description BACKGROUND: Early identification of respiratory pathogens is crucial for favorable clinical outcomes. Metagenomic next-generation sequencing (mNGS) offers an alternative approach to identify pathogens in complex clinical samples. This study aimed to assess the cost-effectiveness of using mNGS in combination with traditional methods in diagnosing suspected respiratory infections patients. METHODS: A decision tree model was developed to illustrate the clinical pathway for patients with suspected respiratory infections in China. Two strategies were compared, one utilizing mNGS combined with traditional pathogen detection methods, and the other relying solely on traditional methods including bronchoalveolar lavage fluid microbial culture, smear microscopy, and serological tests. The study was conducted from the Chinese healthcare system perspective. Survival outcome, life years outcome and cost outcomes were captured over a lifetime horizon. Model inputs, including cost (specimen collection cost, diagnosis cost, imaging examination cost, drug cost and inpatient bed cost), treatment efficacy, mortality, sensitivity and specificity of different testing strategies, were derived from published literature and experts’ interviews. Uncertainty was assessed by sensitivity analyses. RESULTS: The base case analysis suggested that, compared with traditional pathogen detection methods, mNGS combined with traditional methods resulted in longer life-year (average 0.18 life-year gain) and lower cost (average saving of 3,069 CNY (453 USD)), among all patients tested. The life-years gain was primarily driven by the more accurate diagnosis and the consequent administration of more effective etiological treatment. The cost saving was largely driven by the reduction of drug costs which resulted from precision medicine-based treatment, instead of empirical treatment. The probabilistic sensitivity analysis confirmed the robustness of the model. CONCLUSION: Compared to traditional methods only, mNGS combined with traditional methods is a cost-effectiveness method for improving patient clinical outcomes while reducing healthcare costs. DISCLOSURES: All Authors: No reported disclosures
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spelling pubmed-106773722023-11-27 558. Cost-effectiveness of Introducing Metagenomic Next-generation Sequencing (mNGS) for the Diagnosis of Suspected Respiratory Infections Patients in China Peng, Siyang Liang, Rui Mao, Sheng Tang, Wen Tang, Mi Ai, Yaping Wang, Junfeng Hong, Guanqi Qu, Shuli Open Forum Infect Dis Abstract BACKGROUND: Early identification of respiratory pathogens is crucial for favorable clinical outcomes. Metagenomic next-generation sequencing (mNGS) offers an alternative approach to identify pathogens in complex clinical samples. This study aimed to assess the cost-effectiveness of using mNGS in combination with traditional methods in diagnosing suspected respiratory infections patients. METHODS: A decision tree model was developed to illustrate the clinical pathway for patients with suspected respiratory infections in China. Two strategies were compared, one utilizing mNGS combined with traditional pathogen detection methods, and the other relying solely on traditional methods including bronchoalveolar lavage fluid microbial culture, smear microscopy, and serological tests. The study was conducted from the Chinese healthcare system perspective. Survival outcome, life years outcome and cost outcomes were captured over a lifetime horizon. Model inputs, including cost (specimen collection cost, diagnosis cost, imaging examination cost, drug cost and inpatient bed cost), treatment efficacy, mortality, sensitivity and specificity of different testing strategies, were derived from published literature and experts’ interviews. Uncertainty was assessed by sensitivity analyses. RESULTS: The base case analysis suggested that, compared with traditional pathogen detection methods, mNGS combined with traditional methods resulted in longer life-year (average 0.18 life-year gain) and lower cost (average saving of 3,069 CNY (453 USD)), among all patients tested. The life-years gain was primarily driven by the more accurate diagnosis and the consequent administration of more effective etiological treatment. The cost saving was largely driven by the reduction of drug costs which resulted from precision medicine-based treatment, instead of empirical treatment. The probabilistic sensitivity analysis confirmed the robustness of the model. CONCLUSION: Compared to traditional methods only, mNGS combined with traditional methods is a cost-effectiveness method for improving patient clinical outcomes while reducing healthcare costs. DISCLOSURES: All Authors: No reported disclosures Oxford University Press 2023-11-27 /pmc/articles/PMC10677372/ http://dx.doi.org/10.1093/ofid/ofad500.627 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Infectious Diseases Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Abstract
Peng, Siyang
Liang, Rui
Mao, Sheng
Tang, Wen
Tang, Mi
Ai, Yaping
Wang, Junfeng
Hong, Guanqi
Qu, Shuli
558. Cost-effectiveness of Introducing Metagenomic Next-generation Sequencing (mNGS) for the Diagnosis of Suspected Respiratory Infections Patients in China
title 558. Cost-effectiveness of Introducing Metagenomic Next-generation Sequencing (mNGS) for the Diagnosis of Suspected Respiratory Infections Patients in China
title_full 558. Cost-effectiveness of Introducing Metagenomic Next-generation Sequencing (mNGS) for the Diagnosis of Suspected Respiratory Infections Patients in China
title_fullStr 558. Cost-effectiveness of Introducing Metagenomic Next-generation Sequencing (mNGS) for the Diagnosis of Suspected Respiratory Infections Patients in China
title_full_unstemmed 558. Cost-effectiveness of Introducing Metagenomic Next-generation Sequencing (mNGS) for the Diagnosis of Suspected Respiratory Infections Patients in China
title_short 558. Cost-effectiveness of Introducing Metagenomic Next-generation Sequencing (mNGS) for the Diagnosis of Suspected Respiratory Infections Patients in China
title_sort 558. cost-effectiveness of introducing metagenomic next-generation sequencing (mngs) for the diagnosis of suspected respiratory infections patients in china
topic Abstract
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10677372/
http://dx.doi.org/10.1093/ofid/ofad500.627
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