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2160. Emergence of INDEL Mutations in KPC-2: Insights into Ceftazidime-Avibactam and Imipenem-Relebactam Efficacy

BACKGROUND: Enterobacterales producing KPC-2 and KPC-3 β-lactamases (Bla) are a significant clinical threat. Ceftazidime/avibactam (CZA) and imipenem/relebactam (IMI/REL) are successful in the treatment for these infections. Unfortunately, CZA-resistant isolates are emerging as a result of amino aci...

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Autores principales: Brunetti, Florencia, Bethel, Christopher R, Sanz, María Belén, Pasterán, Fernando, Gutkind, Gabriel, Gomez, Sonia, Bonomo, Robert A, Power, Pablo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10677562/
http://dx.doi.org/10.1093/ofid/ofad500.1783
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author Brunetti, Florencia
Bethel, Christopher R
Sanz, María Belén
Pasterán, Fernando
Gutkind, Gabriel
Gomez, Sonia
Bonomo, Robert A
Power, Pablo
author_facet Brunetti, Florencia
Bethel, Christopher R
Sanz, María Belén
Pasterán, Fernando
Gutkind, Gabriel
Gomez, Sonia
Bonomo, Robert A
Power, Pablo
author_sort Brunetti, Florencia
collection PubMed
description BACKGROUND: Enterobacterales producing KPC-2 and KPC-3 β-lactamases (Bla) are a significant clinical threat. Ceftazidime/avibactam (CZA) and imipenem/relebactam (IMI/REL) are successful in the treatment for these infections. Unfortunately, CZA-resistant isolates are emerging as a result of amino acid changes in three “hotspots” in the KPC Bla: Ω-loop region; the 237-243 loop; and the 266-275 loop (Figure 1). Our goal here is to assess the effect of insertion-deletion (INDEL) mutations located in the three hotspots in KPC-2, and their impact on the efficacy of these two drug combinations [Figure: see text] METHODS: The bla(KPC-44) (ins_261_AVYTRAPNKDDKHSE), bla(KPC-80) (ins_267_PNK), bla(KPC-81) (del_173_I), bla(KPC-97) (ins_276_VNSEA), and bla(KPC-160) (del_167_LE) genes were amplified by PCR from K. pneumoniae isolates resistant to CZA. The bla(KPC-14) (del_242-243_GT) gene was obtained by mutagenesis from the bla(KPC-2) gene. Genes were cloned in pMBLe and transformed in E. coli TOP10 for MIC determinations. Immunoblotting with polyclonal anti-KPC-2 antibody was performed in whole-cell preparations. Molecular modeling of KPC variants were obtained by Yasara RESULTS: All KPC variants demonstrated lower MICs compared to KPC-2 for most β-lactams (carbapenems included), except for CAZ, where variants exhibited up to 8-fold higher MICs. All variant clones showed at least a 3-dilution higher MICs for CZA, except KPC-160. IMI-REL restored susceptibility to KPC-2 and INDEL variants. The Ω−loop variants exhibited lower MICs compared to the other hotspots variants (CZA included). INDEL mutations resulted in decreased levels of protein production, with KPC-81 production being the most affected. In silico models suggest that INDEL mutations have different effects depending on the structural domain affected [Figure: see text] [Figure: see text] CONCLUSION: INDEL mutations in the three hotspots of KPC-2 can impair CZA activity, but not affect IMI/REL susceptibility. The differences in MICs among the variants suggest that each hotspot affects the interactions of KPC-2 with CAZ and AVI through different mechanisms. Additionally, INDEL mutations appear to decrease protein stability as Bla production levels are reduced. This work provides relevant information about the changes in the interaction with DBO inhibitors associated with INDEL mutations in KPC-2 DISCLOSURES: Robert A. bonomo, MD, Entasis, Merck, VenatoRx, Wockhardt: Grant/Research Support
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spelling pubmed-106775622023-11-27 2160. Emergence of INDEL Mutations in KPC-2: Insights into Ceftazidime-Avibactam and Imipenem-Relebactam Efficacy Brunetti, Florencia Bethel, Christopher R Sanz, María Belén Pasterán, Fernando Gutkind, Gabriel Gomez, Sonia Bonomo, Robert A Power, Pablo Open Forum Infect Dis Abstract BACKGROUND: Enterobacterales producing KPC-2 and KPC-3 β-lactamases (Bla) are a significant clinical threat. Ceftazidime/avibactam (CZA) and imipenem/relebactam (IMI/REL) are successful in the treatment for these infections. Unfortunately, CZA-resistant isolates are emerging as a result of amino acid changes in three “hotspots” in the KPC Bla: Ω-loop region; the 237-243 loop; and the 266-275 loop (Figure 1). Our goal here is to assess the effect of insertion-deletion (INDEL) mutations located in the three hotspots in KPC-2, and their impact on the efficacy of these two drug combinations [Figure: see text] METHODS: The bla(KPC-44) (ins_261_AVYTRAPNKDDKHSE), bla(KPC-80) (ins_267_PNK), bla(KPC-81) (del_173_I), bla(KPC-97) (ins_276_VNSEA), and bla(KPC-160) (del_167_LE) genes were amplified by PCR from K. pneumoniae isolates resistant to CZA. The bla(KPC-14) (del_242-243_GT) gene was obtained by mutagenesis from the bla(KPC-2) gene. Genes were cloned in pMBLe and transformed in E. coli TOP10 for MIC determinations. Immunoblotting with polyclonal anti-KPC-2 antibody was performed in whole-cell preparations. Molecular modeling of KPC variants were obtained by Yasara RESULTS: All KPC variants demonstrated lower MICs compared to KPC-2 for most β-lactams (carbapenems included), except for CAZ, where variants exhibited up to 8-fold higher MICs. All variant clones showed at least a 3-dilution higher MICs for CZA, except KPC-160. IMI-REL restored susceptibility to KPC-2 and INDEL variants. The Ω−loop variants exhibited lower MICs compared to the other hotspots variants (CZA included). INDEL mutations resulted in decreased levels of protein production, with KPC-81 production being the most affected. In silico models suggest that INDEL mutations have different effects depending on the structural domain affected [Figure: see text] [Figure: see text] CONCLUSION: INDEL mutations in the three hotspots of KPC-2 can impair CZA activity, but not affect IMI/REL susceptibility. The differences in MICs among the variants suggest that each hotspot affects the interactions of KPC-2 with CAZ and AVI through different mechanisms. Additionally, INDEL mutations appear to decrease protein stability as Bla production levels are reduced. This work provides relevant information about the changes in the interaction with DBO inhibitors associated with INDEL mutations in KPC-2 DISCLOSURES: Robert A. bonomo, MD, Entasis, Merck, VenatoRx, Wockhardt: Grant/Research Support Oxford University Press 2023-11-27 /pmc/articles/PMC10677562/ http://dx.doi.org/10.1093/ofid/ofad500.1783 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Infectious Diseases Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Abstract
Brunetti, Florencia
Bethel, Christopher R
Sanz, María Belén
Pasterán, Fernando
Gutkind, Gabriel
Gomez, Sonia
Bonomo, Robert A
Power, Pablo
2160. Emergence of INDEL Mutations in KPC-2: Insights into Ceftazidime-Avibactam and Imipenem-Relebactam Efficacy
title 2160. Emergence of INDEL Mutations in KPC-2: Insights into Ceftazidime-Avibactam and Imipenem-Relebactam Efficacy
title_full 2160. Emergence of INDEL Mutations in KPC-2: Insights into Ceftazidime-Avibactam and Imipenem-Relebactam Efficacy
title_fullStr 2160. Emergence of INDEL Mutations in KPC-2: Insights into Ceftazidime-Avibactam and Imipenem-Relebactam Efficacy
title_full_unstemmed 2160. Emergence of INDEL Mutations in KPC-2: Insights into Ceftazidime-Avibactam and Imipenem-Relebactam Efficacy
title_short 2160. Emergence of INDEL Mutations in KPC-2: Insights into Ceftazidime-Avibactam and Imipenem-Relebactam Efficacy
title_sort 2160. emergence of indel mutations in kpc-2: insights into ceftazidime-avibactam and imipenem-relebactam efficacy
topic Abstract
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10677562/
http://dx.doi.org/10.1093/ofid/ofad500.1783
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