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2806. The Mechanism of β-Lactam Antibiotic Action: Structural Analysis of Mycobacterium abscessus l,d-Transpeptidases, d,d-Carboxypeptidase and penicillin-binding-proteins binding by imipenem, ceftaroline, and amoxicillin

BACKGROUND: M. abscessus (Mab) is among the most clinically challenging pathogens. There are significant gaps remaining in mechanism of β-lactams action in Mab. β-Lactams preferentially inactivate one or multiple different L,D-Transpeptidases (LDTs) and penicillin-binding proteins (PBPs). Founded on...

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Autores principales: Shin, Eunjeong, Nantongo, Mary, Dousa, Khalid M, Bethel, Christopher R, Taracila, Magdalena A, Kreiswirth, Barry N, Holland, Steven M, Bonomo, Robert A
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10677597/
http://dx.doi.org/10.1093/ofid/ofad500.2417
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author Shin, Eunjeong
Nantongo, Mary
Dousa, Khalid M
Bethel, Christopher R
Taracila, Magdalena A
Kreiswirth, Barry N
Holland, Steven M
Bonomo, Robert A
author_facet Shin, Eunjeong
Nantongo, Mary
Dousa, Khalid M
Bethel, Christopher R
Taracila, Magdalena A
Kreiswirth, Barry N
Holland, Steven M
Bonomo, Robert A
author_sort Shin, Eunjeong
collection PubMed
description BACKGROUND: M. abscessus (Mab) is among the most clinically challenging pathogens. There are significant gaps remaining in mechanism of β-lactams action in Mab. β-Lactams preferentially inactivate one or multiple different L,D-Transpeptidases (LDTs) and penicillin-binding proteins (PBPs). Founded on our LDT binding data and in vitro synergistic efficacy of imipenem (IPM), ceftaroline (CFT), and amoxicillin (AMX) in Mab, this study aimed to identify binding affinities, conformational changes and the thermal stability of five LDTs and PBPs via β-lactam binding for further structure-activity relationship. METHODS: Binding affinity was measured by kinetic studies, MS analysis, or Bocillin-FL inhibition assay. We investigated changes in the secondary structure of five LDTs (LDT1-5), d,d-carboxypeptidase, PBPB, and PBP-lipo in response to bind of IPM, CFT, and AMX using circular dichroism (CD) spectroscopy in the far-UV region. To assess the thermal stability of these LDTs, we employed a Differential Scanning Fluorimetry (DSF) assay. RESULTS: CD analysis revealed a significant negative shift of LDT1, LDT2, and PBPB upon binding with either single or combination of imipenem (IPM) and ceftriaxone (CFT), particularly in the 210-220 nm range. Using DSF, IPM and CFT binding to LDTs, DDC and PBPB were found to alter the thermal stability of these protein enzymes. IPM induced a decrease in the melting temperature (T(m)) in the range of 2.6-6.8 ˚C for LDTs and PBPB, while caused an increase in Tm for DDC. CFT caused decrease in Tm in the range of 1.4-3 ˚C for LDTs but increase in Tm for DDC and PBPB. In contrast, amoxicillin (AMX) only targeted DDC, PBPB, and PBP-lipo and caused changes in Tm. The magnitude of the change in Tm varied between combinations and single β-lactams. Although there was no evidence of a correlation between changes in protein stability upon ligand binding and ligand binding affinity, IPM with high binding affinity (lower value of K(i,app)) resulted in larger decreases in Tm compared to CFT. [Figure: see text] CONCLUSION: β-Lactam binding in single and combination leads to distinct structural changes of LDTs and PBPs, likely reflecting synergistic interactions between the two β-lactams. Further crystallography will be required to gain a better understanding of the induced structural changes. DISCLOSURES: Robert A. bonomo, MD, Entasis, Merck, VenatoRx, Wockhardt: Grant/Research Support
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spelling pubmed-106775972023-11-27 2806. The Mechanism of β-Lactam Antibiotic Action: Structural Analysis of Mycobacterium abscessus l,d-Transpeptidases, d,d-Carboxypeptidase and penicillin-binding-proteins binding by imipenem, ceftaroline, and amoxicillin Shin, Eunjeong Nantongo, Mary Dousa, Khalid M Bethel, Christopher R Taracila, Magdalena A Kreiswirth, Barry N Holland, Steven M Bonomo, Robert A Open Forum Infect Dis Abstract BACKGROUND: M. abscessus (Mab) is among the most clinically challenging pathogens. There are significant gaps remaining in mechanism of β-lactams action in Mab. β-Lactams preferentially inactivate one or multiple different L,D-Transpeptidases (LDTs) and penicillin-binding proteins (PBPs). Founded on our LDT binding data and in vitro synergistic efficacy of imipenem (IPM), ceftaroline (CFT), and amoxicillin (AMX) in Mab, this study aimed to identify binding affinities, conformational changes and the thermal stability of five LDTs and PBPs via β-lactam binding for further structure-activity relationship. METHODS: Binding affinity was measured by kinetic studies, MS analysis, or Bocillin-FL inhibition assay. We investigated changes in the secondary structure of five LDTs (LDT1-5), d,d-carboxypeptidase, PBPB, and PBP-lipo in response to bind of IPM, CFT, and AMX using circular dichroism (CD) spectroscopy in the far-UV region. To assess the thermal stability of these LDTs, we employed a Differential Scanning Fluorimetry (DSF) assay. RESULTS: CD analysis revealed a significant negative shift of LDT1, LDT2, and PBPB upon binding with either single or combination of imipenem (IPM) and ceftriaxone (CFT), particularly in the 210-220 nm range. Using DSF, IPM and CFT binding to LDTs, DDC and PBPB were found to alter the thermal stability of these protein enzymes. IPM induced a decrease in the melting temperature (T(m)) in the range of 2.6-6.8 ˚C for LDTs and PBPB, while caused an increase in Tm for DDC. CFT caused decrease in Tm in the range of 1.4-3 ˚C for LDTs but increase in Tm for DDC and PBPB. In contrast, amoxicillin (AMX) only targeted DDC, PBPB, and PBP-lipo and caused changes in Tm. The magnitude of the change in Tm varied between combinations and single β-lactams. Although there was no evidence of a correlation between changes in protein stability upon ligand binding and ligand binding affinity, IPM with high binding affinity (lower value of K(i,app)) resulted in larger decreases in Tm compared to CFT. [Figure: see text] CONCLUSION: β-Lactam binding in single and combination leads to distinct structural changes of LDTs and PBPs, likely reflecting synergistic interactions between the two β-lactams. Further crystallography will be required to gain a better understanding of the induced structural changes. DISCLOSURES: Robert A. bonomo, MD, Entasis, Merck, VenatoRx, Wockhardt: Grant/Research Support Oxford University Press 2023-11-27 /pmc/articles/PMC10677597/ http://dx.doi.org/10.1093/ofid/ofad500.2417 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Infectious Diseases Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Abstract
Shin, Eunjeong
Nantongo, Mary
Dousa, Khalid M
Bethel, Christopher R
Taracila, Magdalena A
Kreiswirth, Barry N
Holland, Steven M
Bonomo, Robert A
2806. The Mechanism of β-Lactam Antibiotic Action: Structural Analysis of Mycobacterium abscessus l,d-Transpeptidases, d,d-Carboxypeptidase and penicillin-binding-proteins binding by imipenem, ceftaroline, and amoxicillin
title 2806. The Mechanism of β-Lactam Antibiotic Action: Structural Analysis of Mycobacterium abscessus l,d-Transpeptidases, d,d-Carboxypeptidase and penicillin-binding-proteins binding by imipenem, ceftaroline, and amoxicillin
title_full 2806. The Mechanism of β-Lactam Antibiotic Action: Structural Analysis of Mycobacterium abscessus l,d-Transpeptidases, d,d-Carboxypeptidase and penicillin-binding-proteins binding by imipenem, ceftaroline, and amoxicillin
title_fullStr 2806. The Mechanism of β-Lactam Antibiotic Action: Structural Analysis of Mycobacterium abscessus l,d-Transpeptidases, d,d-Carboxypeptidase and penicillin-binding-proteins binding by imipenem, ceftaroline, and amoxicillin
title_full_unstemmed 2806. The Mechanism of β-Lactam Antibiotic Action: Structural Analysis of Mycobacterium abscessus l,d-Transpeptidases, d,d-Carboxypeptidase and penicillin-binding-proteins binding by imipenem, ceftaroline, and amoxicillin
title_short 2806. The Mechanism of β-Lactam Antibiotic Action: Structural Analysis of Mycobacterium abscessus l,d-Transpeptidases, d,d-Carboxypeptidase and penicillin-binding-proteins binding by imipenem, ceftaroline, and amoxicillin
title_sort 2806. the mechanism of β-lactam antibiotic action: structural analysis of mycobacterium abscessus l,d-transpeptidases, d,d-carboxypeptidase and penicillin-binding-proteins binding by imipenem, ceftaroline, and amoxicillin
topic Abstract
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10677597/
http://dx.doi.org/10.1093/ofid/ofad500.2417
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