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1422. Surveillance for fungi in hospital environments housing high-risk hosts using culture and culture-independent methods

BACKGROUND: Nosocomial outbreaks of fungal infections are increasingly reported. There are scant data on fungal burdens in hospital environments. Standardized surveillance methods are lacking. [Figure: see text] [Figure: see text] METHODS: We developed culture and culture-independent (real-time PCR,...

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Autores principales: Clancy, Cornelius J, Cheng, Shaoji, Hao, Binghua, Driscoll, Eileen, Fleres, Giuseppe, Buser, Katherine, Sundermann, Alexander, Ayres, Ashley, Snyder, Graham M, Hong Nguyen, M
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10677668/
http://dx.doi.org/10.1093/ofid/ofad500.1259
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author Clancy, Cornelius J
Cheng, Shaoji
Hao, Binghua
Driscoll, Eileen
Fleres, Giuseppe
Buser, Katherine
Sundermann, Alexander
Ayres, Ashley
Snyder, Graham M
Hong Nguyen, M
author_facet Clancy, Cornelius J
Cheng, Shaoji
Hao, Binghua
Driscoll, Eileen
Fleres, Giuseppe
Buser, Katherine
Sundermann, Alexander
Ayres, Ashley
Snyder, Graham M
Hong Nguyen, M
author_sort Clancy, Cornelius J
collection PubMed
description BACKGROUND: Nosocomial outbreaks of fungal infections are increasingly reported. There are scant data on fungal burdens in hospital environments. Standardized surveillance methods are lacking. [Figure: see text] [Figure: see text] METHODS: We developed culture and culture-independent (real-time PCR, reference to standard curve) methods for measuring airborne fungal burdens using SAS Super 100 and SASS 3100 Dry Air samplers. We performed serial surveillance in 7 units with high-risk, immunosuppressed patients in 2 hospitals and outside. [Figure: see text] RESULTS: Methods were optimized for multiple variables, including volume, duration, flow of air sampling; culturing techniques (direct impact plates, cultures at different stages of filter processing); filter DNA recovery (extraction protocols, stage of filter processing); PCR (targets, primers, PCR parameters). To date, we have surveyed each unit ≥4 times. Pathogenic moulds were cultured in >50% of outdoor and indoor air, including azole-resistant Aspergillus species [Figures 1A-B]. Fungal burdens were significantly greater outside than inside hospitals, by both positive culture % and DNA burden [Figure 2]. There was no correlation between outside and inside genome equivalents (GEs; R(2)< 0.06), nor were there significant differences in GEs within a given unit (nurses stations, patient rooms; all p >0.1). GEs were greater in culture-positive than culture-negative samples (Aspergillus, 2.4 vs. 1.5 log(10); pan-fungal, 2.8 vs. 1.5 log(10)GE; p< 0.0001; best results with sonicated filters). Direct impact cultures were less sensitive than filter cultures. CONCLUSION: We developed standardized methods for sampling airborne fungi in hospitals that yield reproducible results. Fungal burdens were significantly lower in hospitals than those immediately outside, but fungal DNA and viable Aspergillus and other moulds were commonly recovered from units housing high-risk patients. Outside fungal burdens could not be used to estimate relative burdens within hospitals. Direct impact cultures, commonly used in surveillance, lacked sensitivity for detecting viable fungi and did not correlate with DNA burdens. We are optimizing direct metagenomic sequencing from airborne samples. We will assess correlations between environmental surveillance data and nosocomial fungal infections. DISCLOSURES: Alexander Sundermann, DrPH, CIC, FAPIC, OpGen: Honoraria Graham M. Snyder, MD, SM, Infectious Diseases Connect: Advisor/Consultant
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spelling pubmed-106776682023-11-27 1422. Surveillance for fungi in hospital environments housing high-risk hosts using culture and culture-independent methods Clancy, Cornelius J Cheng, Shaoji Hao, Binghua Driscoll, Eileen Fleres, Giuseppe Buser, Katherine Sundermann, Alexander Ayres, Ashley Snyder, Graham M Hong Nguyen, M Open Forum Infect Dis Abstract BACKGROUND: Nosocomial outbreaks of fungal infections are increasingly reported. There are scant data on fungal burdens in hospital environments. Standardized surveillance methods are lacking. [Figure: see text] [Figure: see text] METHODS: We developed culture and culture-independent (real-time PCR, reference to standard curve) methods for measuring airborne fungal burdens using SAS Super 100 and SASS 3100 Dry Air samplers. We performed serial surveillance in 7 units with high-risk, immunosuppressed patients in 2 hospitals and outside. [Figure: see text] RESULTS: Methods were optimized for multiple variables, including volume, duration, flow of air sampling; culturing techniques (direct impact plates, cultures at different stages of filter processing); filter DNA recovery (extraction protocols, stage of filter processing); PCR (targets, primers, PCR parameters). To date, we have surveyed each unit ≥4 times. Pathogenic moulds were cultured in >50% of outdoor and indoor air, including azole-resistant Aspergillus species [Figures 1A-B]. Fungal burdens were significantly greater outside than inside hospitals, by both positive culture % and DNA burden [Figure 2]. There was no correlation between outside and inside genome equivalents (GEs; R(2)< 0.06), nor were there significant differences in GEs within a given unit (nurses stations, patient rooms; all p >0.1). GEs were greater in culture-positive than culture-negative samples (Aspergillus, 2.4 vs. 1.5 log(10); pan-fungal, 2.8 vs. 1.5 log(10)GE; p< 0.0001; best results with sonicated filters). Direct impact cultures were less sensitive than filter cultures. CONCLUSION: We developed standardized methods for sampling airborne fungi in hospitals that yield reproducible results. Fungal burdens were significantly lower in hospitals than those immediately outside, but fungal DNA and viable Aspergillus and other moulds were commonly recovered from units housing high-risk patients. Outside fungal burdens could not be used to estimate relative burdens within hospitals. Direct impact cultures, commonly used in surveillance, lacked sensitivity for detecting viable fungi and did not correlate with DNA burdens. We are optimizing direct metagenomic sequencing from airborne samples. We will assess correlations between environmental surveillance data and nosocomial fungal infections. DISCLOSURES: Alexander Sundermann, DrPH, CIC, FAPIC, OpGen: Honoraria Graham M. Snyder, MD, SM, Infectious Diseases Connect: Advisor/Consultant Oxford University Press 2023-11-27 /pmc/articles/PMC10677668/ http://dx.doi.org/10.1093/ofid/ofad500.1259 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Infectious Diseases Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Abstract
Clancy, Cornelius J
Cheng, Shaoji
Hao, Binghua
Driscoll, Eileen
Fleres, Giuseppe
Buser, Katherine
Sundermann, Alexander
Ayres, Ashley
Snyder, Graham M
Hong Nguyen, M
1422. Surveillance for fungi in hospital environments housing high-risk hosts using culture and culture-independent methods
title 1422. Surveillance for fungi in hospital environments housing high-risk hosts using culture and culture-independent methods
title_full 1422. Surveillance for fungi in hospital environments housing high-risk hosts using culture and culture-independent methods
title_fullStr 1422. Surveillance for fungi in hospital environments housing high-risk hosts using culture and culture-independent methods
title_full_unstemmed 1422. Surveillance for fungi in hospital environments housing high-risk hosts using culture and culture-independent methods
title_short 1422. Surveillance for fungi in hospital environments housing high-risk hosts using culture and culture-independent methods
title_sort 1422. surveillance for fungi in hospital environments housing high-risk hosts using culture and culture-independent methods
topic Abstract
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10677668/
http://dx.doi.org/10.1093/ofid/ofad500.1259
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