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2309. Impact of Stopping Asymptomatic SARS-Co-V-2 Admission Testing: An Autoregressive Integrated Moving Average (ARIMA) Model Analysis at Stanford Healthcare, 2023
BACKGROUND: Admission SARS-Co-V-2 testing for asymptomatic patients has been implemented in most US hospitals. However, testing patients with a low pretest probability may lead to more false positives than true positives, inappropriate isolation and delays in care. We recently deimplemented asymptom...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10677736/ http://dx.doi.org/10.1093/ofid/ofad500.1931 |
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author | Rodriguez-Nava, Guillermo Tompkins, Lucy S McIntyre, Karen Bohman, Bryan Salinas, Jorge |
author_facet | Rodriguez-Nava, Guillermo Tompkins, Lucy S McIntyre, Karen Bohman, Bryan Salinas, Jorge |
author_sort | Rodriguez-Nava, Guillermo |
collection | PubMed |
description | BACKGROUND: Admission SARS-Co-V-2 testing for asymptomatic patients has been implemented in most US hospitals. However, testing patients with a low pretest probability may lead to more false positives than true positives, inappropriate isolation and delays in care. We recently deimplemented asymptomatic admission testing at Stanford Healthcare. Here, we model the impact of this policy change on the number of false-positive COVID-19 cases. METHODS: We retrieved data for inpatients with a positive SARS-Co-V-2 test at Stanford Healthcare from January 2020–February 2023. The Augmented Dickey-Fuller (ADF) test was used to determine if the time series was stationary. Autocorrelation function (ACF) and partial autocorrelation function (PACF) plots were generated to determine potential parameters for the ARIMA model. An automated algorithm was used to determine the optimal parameters for the final ARIMA model, which included 'step' and 'ramp' exogenous variables to account for policy interventions. We calculated the number of false positives by using infectiousness data previously collected using a SARS-Co-V-2 strand specific assay. RESULTS: The number of inpatient COVID-19 cases at Stanford Healthcare during January 2020–February 2023 is illustrated in Figure 1. The ADF statistic was -4.48 (p< .001), indicating that the time series was stationary (data transformation not required). Figure 2 shows the ACF and PACF plots. Figure 3 shows the values predicted by our final ARIMA model in absence of the intervention (counterfactual) compared to observed values. Stopping asymptomatic SARS-Co-V2 admission testing was associated with a decrease of 1,396 and 518 SARS-CoV-2 positive cases in January and February 2023. Using a 9% active SARS-Co-V-2 infection in asymptomatic patients at our institution; we avoided 1,271 and 471 false positive cases in January and February 2023, although 125 and 47true positive cases may have been missed. Healthcare-associated COVID-19 cases did not change. [Figure: see text] [Figure: see text] Figure 2 Caption We first used auto_arima to fit the ARIMA model with order (0, 0, 1). However, we noticed a seasonal trend with higher cases in September and January, so we included seasonal_order (1, 1, 1, 12) parameters in the final model. [Figure: see text] The model had an intercept of 477.7352 and a ma.L1 coefficient of 0.4978, with a statistically significant sigma2 value of 1.204e+05. The Ljung-Box (L1) had a high probability of 0.75, indicating no evidence of autocorrelation, and the Jarque-Bera (JB) had a low probability of 0.00, indicating non-normality of the residuals. Heteroskedasticity was observed with a p-value of 0.07, suggesting the presence of non-constant variance in the error terms. CONCLUSION: The policy change to stop asymptomatic SARS-Co-V-2 admission testing was associated with an immediate decrease of false-positive COVID-19 cases, conserving healthcare resources and avoiding unnecessary isolation without compromising patient safety. DISCLOSURES: All Authors: No reported disclosures |
format | Online Article Text |
id | pubmed-10677736 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-106777362023-11-27 2309. Impact of Stopping Asymptomatic SARS-Co-V-2 Admission Testing: An Autoregressive Integrated Moving Average (ARIMA) Model Analysis at Stanford Healthcare, 2023 Rodriguez-Nava, Guillermo Tompkins, Lucy S McIntyre, Karen Bohman, Bryan Salinas, Jorge Open Forum Infect Dis Abstract BACKGROUND: Admission SARS-Co-V-2 testing for asymptomatic patients has been implemented in most US hospitals. However, testing patients with a low pretest probability may lead to more false positives than true positives, inappropriate isolation and delays in care. We recently deimplemented asymptomatic admission testing at Stanford Healthcare. Here, we model the impact of this policy change on the number of false-positive COVID-19 cases. METHODS: We retrieved data for inpatients with a positive SARS-Co-V-2 test at Stanford Healthcare from January 2020–February 2023. The Augmented Dickey-Fuller (ADF) test was used to determine if the time series was stationary. Autocorrelation function (ACF) and partial autocorrelation function (PACF) plots were generated to determine potential parameters for the ARIMA model. An automated algorithm was used to determine the optimal parameters for the final ARIMA model, which included 'step' and 'ramp' exogenous variables to account for policy interventions. We calculated the number of false positives by using infectiousness data previously collected using a SARS-Co-V-2 strand specific assay. RESULTS: The number of inpatient COVID-19 cases at Stanford Healthcare during January 2020–February 2023 is illustrated in Figure 1. The ADF statistic was -4.48 (p< .001), indicating that the time series was stationary (data transformation not required). Figure 2 shows the ACF and PACF plots. Figure 3 shows the values predicted by our final ARIMA model in absence of the intervention (counterfactual) compared to observed values. Stopping asymptomatic SARS-Co-V2 admission testing was associated with a decrease of 1,396 and 518 SARS-CoV-2 positive cases in January and February 2023. Using a 9% active SARS-Co-V-2 infection in asymptomatic patients at our institution; we avoided 1,271 and 471 false positive cases in January and February 2023, although 125 and 47true positive cases may have been missed. Healthcare-associated COVID-19 cases did not change. [Figure: see text] [Figure: see text] Figure 2 Caption We first used auto_arima to fit the ARIMA model with order (0, 0, 1). However, we noticed a seasonal trend with higher cases in September and January, so we included seasonal_order (1, 1, 1, 12) parameters in the final model. [Figure: see text] The model had an intercept of 477.7352 and a ma.L1 coefficient of 0.4978, with a statistically significant sigma2 value of 1.204e+05. The Ljung-Box (L1) had a high probability of 0.75, indicating no evidence of autocorrelation, and the Jarque-Bera (JB) had a low probability of 0.00, indicating non-normality of the residuals. Heteroskedasticity was observed with a p-value of 0.07, suggesting the presence of non-constant variance in the error terms. CONCLUSION: The policy change to stop asymptomatic SARS-Co-V-2 admission testing was associated with an immediate decrease of false-positive COVID-19 cases, conserving healthcare resources and avoiding unnecessary isolation without compromising patient safety. DISCLOSURES: All Authors: No reported disclosures Oxford University Press 2023-11-27 /pmc/articles/PMC10677736/ http://dx.doi.org/10.1093/ofid/ofad500.1931 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Infectious Diseases Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Abstract Rodriguez-Nava, Guillermo Tompkins, Lucy S McIntyre, Karen Bohman, Bryan Salinas, Jorge 2309. Impact of Stopping Asymptomatic SARS-Co-V-2 Admission Testing: An Autoregressive Integrated Moving Average (ARIMA) Model Analysis at Stanford Healthcare, 2023 |
title | 2309. Impact of Stopping Asymptomatic SARS-Co-V-2 Admission Testing: An Autoregressive Integrated Moving Average (ARIMA) Model Analysis at Stanford Healthcare, 2023 |
title_full | 2309. Impact of Stopping Asymptomatic SARS-Co-V-2 Admission Testing: An Autoregressive Integrated Moving Average (ARIMA) Model Analysis at Stanford Healthcare, 2023 |
title_fullStr | 2309. Impact of Stopping Asymptomatic SARS-Co-V-2 Admission Testing: An Autoregressive Integrated Moving Average (ARIMA) Model Analysis at Stanford Healthcare, 2023 |
title_full_unstemmed | 2309. Impact of Stopping Asymptomatic SARS-Co-V-2 Admission Testing: An Autoregressive Integrated Moving Average (ARIMA) Model Analysis at Stanford Healthcare, 2023 |
title_short | 2309. Impact of Stopping Asymptomatic SARS-Co-V-2 Admission Testing: An Autoregressive Integrated Moving Average (ARIMA) Model Analysis at Stanford Healthcare, 2023 |
title_sort | 2309. impact of stopping asymptomatic sars-co-v-2 admission testing: an autoregressive integrated moving average (arima) model analysis at stanford healthcare, 2023 |
topic | Abstract |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10677736/ http://dx.doi.org/10.1093/ofid/ofad500.1931 |
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