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410. Acinetobacter baumannii Infections During COVID: Molecular Epidemiology and Outcomes at a Tertiary Hospital in Dallas

BACKGROUND: Acinetobacter baumannii (AB) is a significant human pathogen that is frequently antibiotic resistant and has been associated with post-COVID-19 infections. METHODS: In this study, we performed whole-genome sequencing on AB isolates collected at an academic medical center in Dallas, TX be...

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Autores principales: Khazi-Syed, Afeefah F, Pybus, Christine A, Clark, Andrew E, Kim, Jiwoong, Zhan, Xiaowei, Desai, Dhara, Barth, Jackson, Greenberg, David E
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10677806/
http://dx.doi.org/10.1093/ofid/ofad500.480
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author Khazi-Syed, Afeefah F
Pybus, Christine A
Clark, Andrew E
Kim, Jiwoong
Zhan, Xiaowei
Desai, Dhara
Barth, Jackson
Greenberg, David E
author_facet Khazi-Syed, Afeefah F
Pybus, Christine A
Clark, Andrew E
Kim, Jiwoong
Zhan, Xiaowei
Desai, Dhara
Barth, Jackson
Greenberg, David E
author_sort Khazi-Syed, Afeefah F
collection PubMed
description BACKGROUND: Acinetobacter baumannii (AB) is a significant human pathogen that is frequently antibiotic resistant and has been associated with post-COVID-19 infections. METHODS: In this study, we performed whole-genome sequencing on AB isolates collected at an academic medical center in Dallas, TX between January 2020 and June 2021. We extracted clinical and laboratory data and analyzed both outcomes and molecular epidemiology of AB isolates in patients with and without COVID-19. RESULTS: Nineteen isolates collected from 17 AB-infected patients were included in this study. Most isolates were cultured from the respiratory tract (58%), followed by urine (16%), blood (10.5%), wound (10.5%), and catheter tips (5%). 4/17 patients were COVID-19 positive. The average Charlson Comorbidity Index at admission was lower for patients with COVID-19 (2.75) compared to counterparts (4.46). Using Fisher’s exact test, no statistical significance was observed in hospital events: ICU Admission (0.08), Ventilation (1.0), and Sepsis (0.23). The mortality rate during admission was 50% for COVID-19 patients and 23% for patients without COVID-19 (Odds Ratio: 3.33, p-value: 0.54, 95% CI: [0.32, 34.83]). All 19 isolates were carbapenem-resistant (CRAB) and multi-drug resistant (MDR) per definitions established by Magiarkos et al. 67% of isolates from COVID-19 patients were extensively-drug resistant (XDR) compared to 33% of isolates from non-COVID-19 patients. MIC data for cefiderocol was available for 9/19 isolates. Values ranged from 0.5 – 16 μM with 4/9 isolates being < 4 μM. Meropenem MIC values for all isolates were ≥ 64 μM. Many isolates contained at least one carbapenemase: OXA-72 (15/19), OXA-23 (3/19), OXA-95 (3/19), OXA-24 (1/19). MLST analysis revealed ST2 as the most common in all patients (15/19), followed by ST499 (3/19) and ST406 (1/19). CONCLUSION: COVID-19 patients infected with AB trended towards a significant difference in mortality compared to AB patients without documented COVID-19 during the same period. All AB isolates were CRAB, and isolates from COVID-19 patients were more likely to be XDR. DISCLOSURES: David E. Greenberg, MD, University of Texas Southwestern Medical Center: Dr. Greenberg has numerous patents on PPMOs
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spelling pubmed-106778062023-11-27 410. Acinetobacter baumannii Infections During COVID: Molecular Epidemiology and Outcomes at a Tertiary Hospital in Dallas Khazi-Syed, Afeefah F Pybus, Christine A Clark, Andrew E Kim, Jiwoong Zhan, Xiaowei Desai, Dhara Barth, Jackson Greenberg, David E Open Forum Infect Dis Abstract BACKGROUND: Acinetobacter baumannii (AB) is a significant human pathogen that is frequently antibiotic resistant and has been associated with post-COVID-19 infections. METHODS: In this study, we performed whole-genome sequencing on AB isolates collected at an academic medical center in Dallas, TX between January 2020 and June 2021. We extracted clinical and laboratory data and analyzed both outcomes and molecular epidemiology of AB isolates in patients with and without COVID-19. RESULTS: Nineteen isolates collected from 17 AB-infected patients were included in this study. Most isolates were cultured from the respiratory tract (58%), followed by urine (16%), blood (10.5%), wound (10.5%), and catheter tips (5%). 4/17 patients were COVID-19 positive. The average Charlson Comorbidity Index at admission was lower for patients with COVID-19 (2.75) compared to counterparts (4.46). Using Fisher’s exact test, no statistical significance was observed in hospital events: ICU Admission (0.08), Ventilation (1.0), and Sepsis (0.23). The mortality rate during admission was 50% for COVID-19 patients and 23% for patients without COVID-19 (Odds Ratio: 3.33, p-value: 0.54, 95% CI: [0.32, 34.83]). All 19 isolates were carbapenem-resistant (CRAB) and multi-drug resistant (MDR) per definitions established by Magiarkos et al. 67% of isolates from COVID-19 patients were extensively-drug resistant (XDR) compared to 33% of isolates from non-COVID-19 patients. MIC data for cefiderocol was available for 9/19 isolates. Values ranged from 0.5 – 16 μM with 4/9 isolates being < 4 μM. Meropenem MIC values for all isolates were ≥ 64 μM. Many isolates contained at least one carbapenemase: OXA-72 (15/19), OXA-23 (3/19), OXA-95 (3/19), OXA-24 (1/19). MLST analysis revealed ST2 as the most common in all patients (15/19), followed by ST499 (3/19) and ST406 (1/19). CONCLUSION: COVID-19 patients infected with AB trended towards a significant difference in mortality compared to AB patients without documented COVID-19 during the same period. All AB isolates were CRAB, and isolates from COVID-19 patients were more likely to be XDR. DISCLOSURES: David E. Greenberg, MD, University of Texas Southwestern Medical Center: Dr. Greenberg has numerous patents on PPMOs Oxford University Press 2023-11-27 /pmc/articles/PMC10677806/ http://dx.doi.org/10.1093/ofid/ofad500.480 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Infectious Diseases Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Abstract
Khazi-Syed, Afeefah F
Pybus, Christine A
Clark, Andrew E
Kim, Jiwoong
Zhan, Xiaowei
Desai, Dhara
Barth, Jackson
Greenberg, David E
410. Acinetobacter baumannii Infections During COVID: Molecular Epidemiology and Outcomes at a Tertiary Hospital in Dallas
title 410. Acinetobacter baumannii Infections During COVID: Molecular Epidemiology and Outcomes at a Tertiary Hospital in Dallas
title_full 410. Acinetobacter baumannii Infections During COVID: Molecular Epidemiology and Outcomes at a Tertiary Hospital in Dallas
title_fullStr 410. Acinetobacter baumannii Infections During COVID: Molecular Epidemiology and Outcomes at a Tertiary Hospital in Dallas
title_full_unstemmed 410. Acinetobacter baumannii Infections During COVID: Molecular Epidemiology and Outcomes at a Tertiary Hospital in Dallas
title_short 410. Acinetobacter baumannii Infections During COVID: Molecular Epidemiology and Outcomes at a Tertiary Hospital in Dallas
title_sort 410. acinetobacter baumannii infections during covid: molecular epidemiology and outcomes at a tertiary hospital in dallas
topic Abstract
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10677806/
http://dx.doi.org/10.1093/ofid/ofad500.480
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