Cargando…

918. Identification of novel druggable host targets for Middle East respiratory syndrome coronavirus using a quantitative phosphoproteomics approach

BACKGROUND: Middle East respiratory syndrome coronavirus (MERS-CoV) causes severe respiratory disease and extrapulmonary complications with a high mortality rate. The molecular mechanisms of MERS remain incompletely understood. Phosphoproteomics identifies proteins containing a phosphate group as po...

Descripción completa

Detalles Bibliográficos
Autores principales: Chan, Jasper F W, Hu, Bingjie, Chik, Kenn K H, Yuan, Shuofeng, Chu, Hin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10678249/
http://dx.doi.org/10.1093/ofid/ofad500.963
_version_ 1785150317629800448
author Chan, Jasper F W
Hu, Bingjie
Chik, Kenn K H
Yuan, Shuofeng
Chu, Hin
author_facet Chan, Jasper F W
Hu, Bingjie
Chik, Kenn K H
Yuan, Shuofeng
Chu, Hin
author_sort Chan, Jasper F W
collection PubMed
description BACKGROUND: Middle East respiratory syndrome coronavirus (MERS-CoV) causes severe respiratory disease and extrapulmonary complications with a high mortality rate. The molecular mechanisms of MERS remain incompletely understood. Phosphoproteomics identifies proteins containing a phosphate group as posttranslational modification and allows rapid analysis of entire phosphorylation-based signaling networks. It has been increasingly used to study virus-host interactions and identify potential host-targeting treatments. METHODS: Label-free quantitative phosphoproteomics on MERS-CoV-infected lung epithelial Calu-3 cells was performed. A comprehensive siRNA library knockdown screen was then performed for all upregulated phosphoproteins followed by in-silico prediction with Group-based Prediction System 3.0 to identify the top-ranked kinases for further investigations. siRNA knockdown and kinase inhibitor treatment were then performed to validate the biological relevance of the identified host targets in MERS-CoV infection. Human dipeptidyl peptidase 4-knock in (hDPP4-KI) mice were used to evaluate the treatment effects of selected inhibitors. RESULTS: We identified more than 300 phosphopeptides that showed a change in phosphorylation status. This markedly perturbed host protein phosphorylation profile included many proteins that were involved in various cellular processes. siRNA library knockdown screen of all upregulated phosphoproteins followed by in silico prediction identified the 5 top-ranked kinases for further investigations. Both siRNA knockdown and kinase inhibitor treatment of these kinases resulted in the significant MERS-CoV load reduction in vitro. Treatment of hDPP4-KI mice with selected kinase inhibitors led to improved clinical outcome with significantly higher survival rate, less body weight loss, and lower lung viral burden. CONCLUSION: Quantitative phosphoproteomics is a useful platform for identifying host factors involved in MERS-CoV infection. Inhibition of these host factors may be a potential treatment strategy for this highly pathogenic coronavirus infection. DISCLOSURES: All Authors: No reported disclosures
format Online
Article
Text
id pubmed-10678249
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-106782492023-11-27 918. Identification of novel druggable host targets for Middle East respiratory syndrome coronavirus using a quantitative phosphoproteomics approach Chan, Jasper F W Hu, Bingjie Chik, Kenn K H Yuan, Shuofeng Chu, Hin Open Forum Infect Dis Abstract BACKGROUND: Middle East respiratory syndrome coronavirus (MERS-CoV) causes severe respiratory disease and extrapulmonary complications with a high mortality rate. The molecular mechanisms of MERS remain incompletely understood. Phosphoproteomics identifies proteins containing a phosphate group as posttranslational modification and allows rapid analysis of entire phosphorylation-based signaling networks. It has been increasingly used to study virus-host interactions and identify potential host-targeting treatments. METHODS: Label-free quantitative phosphoproteomics on MERS-CoV-infected lung epithelial Calu-3 cells was performed. A comprehensive siRNA library knockdown screen was then performed for all upregulated phosphoproteins followed by in-silico prediction with Group-based Prediction System 3.0 to identify the top-ranked kinases for further investigations. siRNA knockdown and kinase inhibitor treatment were then performed to validate the biological relevance of the identified host targets in MERS-CoV infection. Human dipeptidyl peptidase 4-knock in (hDPP4-KI) mice were used to evaluate the treatment effects of selected inhibitors. RESULTS: We identified more than 300 phosphopeptides that showed a change in phosphorylation status. This markedly perturbed host protein phosphorylation profile included many proteins that were involved in various cellular processes. siRNA library knockdown screen of all upregulated phosphoproteins followed by in silico prediction identified the 5 top-ranked kinases for further investigations. Both siRNA knockdown and kinase inhibitor treatment of these kinases resulted in the significant MERS-CoV load reduction in vitro. Treatment of hDPP4-KI mice with selected kinase inhibitors led to improved clinical outcome with significantly higher survival rate, less body weight loss, and lower lung viral burden. CONCLUSION: Quantitative phosphoproteomics is a useful platform for identifying host factors involved in MERS-CoV infection. Inhibition of these host factors may be a potential treatment strategy for this highly pathogenic coronavirus infection. DISCLOSURES: All Authors: No reported disclosures Oxford University Press 2023-11-27 /pmc/articles/PMC10678249/ http://dx.doi.org/10.1093/ofid/ofad500.963 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Infectious Diseases Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Abstract
Chan, Jasper F W
Hu, Bingjie
Chik, Kenn K H
Yuan, Shuofeng
Chu, Hin
918. Identification of novel druggable host targets for Middle East respiratory syndrome coronavirus using a quantitative phosphoproteomics approach
title 918. Identification of novel druggable host targets for Middle East respiratory syndrome coronavirus using a quantitative phosphoproteomics approach
title_full 918. Identification of novel druggable host targets for Middle East respiratory syndrome coronavirus using a quantitative phosphoproteomics approach
title_fullStr 918. Identification of novel druggable host targets for Middle East respiratory syndrome coronavirus using a quantitative phosphoproteomics approach
title_full_unstemmed 918. Identification of novel druggable host targets for Middle East respiratory syndrome coronavirus using a quantitative phosphoproteomics approach
title_short 918. Identification of novel druggable host targets for Middle East respiratory syndrome coronavirus using a quantitative phosphoproteomics approach
title_sort 918. identification of novel druggable host targets for middle east respiratory syndrome coronavirus using a quantitative phosphoproteomics approach
topic Abstract
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10678249/
http://dx.doi.org/10.1093/ofid/ofad500.963
work_keys_str_mv AT chanjasperfw 918identificationofnoveldruggablehosttargetsformiddleeastrespiratorysyndromecoronavirususingaquantitativephosphoproteomicsapproach
AT hubingjie 918identificationofnoveldruggablehosttargetsformiddleeastrespiratorysyndromecoronavirususingaquantitativephosphoproteomicsapproach
AT chikkennkh 918identificationofnoveldruggablehosttargetsformiddleeastrespiratorysyndromecoronavirususingaquantitativephosphoproteomicsapproach
AT yuanshuofeng 918identificationofnoveldruggablehosttargetsformiddleeastrespiratorysyndromecoronavirususingaquantitativephosphoproteomicsapproach
AT chuhin 918identificationofnoveldruggablehosttargetsformiddleeastrespiratorysyndromecoronavirususingaquantitativephosphoproteomicsapproach