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307. Exploring HLA genotypes as contributing risk factors in Staphylococcus aureus bacteremia

BACKGROUND: The impact of host genetic variability on the outcome of S. aureus infection is unknown. HLA variation has evolved to ensure broad presentation of pathogen derived peptides to initiate protective adaptive immune responses. In genome-wide association studies we identified specific HLA cla...

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Autores principales: Tao, Yazhong, Hung, Frances, Jogodnik, Matthew, Fu, Dezhao, Kair, Jackson L, Dykxhoorn, Derek M, Ruffin, Felicia, Scott, William K, Chan, Cliburn, Fowler, Vance G, Jackson, Annette M
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
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Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10678258/
http://dx.doi.org/10.1093/ofid/ofad500.379
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author Tao, Yazhong
Hung, Frances
Jogodnik, Matthew
Fu, Dezhao
Kair, Jackson L
Dykxhoorn, Derek M
Ruffin, Felicia
Scott, William K
Chan, Cliburn
Fowler, Vance G
Jackson, Annette M
author_facet Tao, Yazhong
Hung, Frances
Jogodnik, Matthew
Fu, Dezhao
Kair, Jackson L
Dykxhoorn, Derek M
Ruffin, Felicia
Scott, William K
Chan, Cliburn
Fowler, Vance G
Jackson, Annette M
author_sort Tao, Yazhong
collection PubMed
description BACKGROUND: The impact of host genetic variability on the outcome of S. aureus infection is unknown. HLA variation has evolved to ensure broad presentation of pathogen derived peptides to initiate protective adaptive immune responses. In genome-wide association studies we identified specific HLA class II variants (HLA-DRB1*04:01 & 04:02) that are positively associated with S. aureus infection. The goal of this study was to determine how HLA-DR variants may differ in their ability to bind and present S. aureus peptides to host T cells and impact protective immunity. METHODS: S. aureus (USA300) proteasome was obtained (UP000008816) and a dataset of 468,812 overlapping 15 amino acid peptides was created. Peptide binding predictions for seven HLA variant subgroups were performed using a machine learning framework (MixMHC2pred 2.0). Binding prediction score of ≤ 2.0 was used as a biological threshold and data was analyzed using R (4.2.2). HLA-DR expression was measured on HLA homozygous B cell lines using flow cytometry (BD Fortessa) and antibodies specific for HLA-DR (L243 APC) and CD69 (FN50-PE) and analyzed using FlowJo and Microsoft Excel. [Figure: see text] RESULTS: We observed different S. aureus peptide binding score distributions across HLA-DRB1 alleles representing unique peptide binding pockets (Fig 1A). Analysis revealed significantly higher proportions of peptides predicted to bind HLA-DRB1*04:01 and DRB1*04:02 compared to controls DRB1*15:01 and DRB1*01:01 (score ≤ 2.0). (Fig 1B). HLA-DR alleles also showed variable expression on HLA homozygous B cell lines, with DRB1*04:02 showing highest and DRB1*04:01 showing lowest expression (Fig 1C). HLA-DR expression was higher on B cells expressing activation marker CD69+ (p< 0.002) for all alleles except DRB1*04:01. In vitro T cell stimulation assays controlling for HLA genotype are in progress. [Figure: see text] [Figure: see text] CONCLUSION: We provide evidence to suggest that variation in peptide binding and cell surface expression may explain the association of HLA class II haplotypes with S. aureus infection. Elucidating the genetic basis of susceptibility to S. aureus infection will improve our understanding, treatment, and prevention of this urgent unmet medical need. DISCLOSURES: Vance G. Fowler, MD, MHS, Amphliphi Biosciences, Integrated Biotherapeutics; C3J, Armata, Valanbio; Akagera, Aridis, Roche, Astra Zeneca: Advisor/Consultant|Genentech, Regeneron, Deep Blue, Basilea, Janssen;: Grant/Research Support|Infectious Diseases Society of America: Honoraria|MedImmune, Allergan, Pfizer, Advanced Liquid Logics, Theravance, Novartis, Merck; Medical Biosurfaces; Locus; Affinergy; Contrafect; Karius;: Grant/Research Support|Novartis, Debiopharm, Genentech, Achaogen, Affinium, Medicines Co., MedImmune, Bayer, Basilea, Affinergy, Janssen, Contrafect, Regeneron, Destiny,: Advisor/Consultant|Sepsis diagnostic: Patent pending|UpToDate: Royalties|Valanbio and ArcBio: Stock Options
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spelling pubmed-106782582023-11-27 307. Exploring HLA genotypes as contributing risk factors in Staphylococcus aureus bacteremia Tao, Yazhong Hung, Frances Jogodnik, Matthew Fu, Dezhao Kair, Jackson L Dykxhoorn, Derek M Ruffin, Felicia Scott, William K Chan, Cliburn Fowler, Vance G Jackson, Annette M Open Forum Infect Dis Abstract BACKGROUND: The impact of host genetic variability on the outcome of S. aureus infection is unknown. HLA variation has evolved to ensure broad presentation of pathogen derived peptides to initiate protective adaptive immune responses. In genome-wide association studies we identified specific HLA class II variants (HLA-DRB1*04:01 & 04:02) that are positively associated with S. aureus infection. The goal of this study was to determine how HLA-DR variants may differ in their ability to bind and present S. aureus peptides to host T cells and impact protective immunity. METHODS: S. aureus (USA300) proteasome was obtained (UP000008816) and a dataset of 468,812 overlapping 15 amino acid peptides was created. Peptide binding predictions for seven HLA variant subgroups were performed using a machine learning framework (MixMHC2pred 2.0). Binding prediction score of ≤ 2.0 was used as a biological threshold and data was analyzed using R (4.2.2). HLA-DR expression was measured on HLA homozygous B cell lines using flow cytometry (BD Fortessa) and antibodies specific for HLA-DR (L243 APC) and CD69 (FN50-PE) and analyzed using FlowJo and Microsoft Excel. [Figure: see text] RESULTS: We observed different S. aureus peptide binding score distributions across HLA-DRB1 alleles representing unique peptide binding pockets (Fig 1A). Analysis revealed significantly higher proportions of peptides predicted to bind HLA-DRB1*04:01 and DRB1*04:02 compared to controls DRB1*15:01 and DRB1*01:01 (score ≤ 2.0). (Fig 1B). HLA-DR alleles also showed variable expression on HLA homozygous B cell lines, with DRB1*04:02 showing highest and DRB1*04:01 showing lowest expression (Fig 1C). HLA-DR expression was higher on B cells expressing activation marker CD69+ (p< 0.002) for all alleles except DRB1*04:01. In vitro T cell stimulation assays controlling for HLA genotype are in progress. [Figure: see text] [Figure: see text] CONCLUSION: We provide evidence to suggest that variation in peptide binding and cell surface expression may explain the association of HLA class II haplotypes with S. aureus infection. Elucidating the genetic basis of susceptibility to S. aureus infection will improve our understanding, treatment, and prevention of this urgent unmet medical need. DISCLOSURES: Vance G. Fowler, MD, MHS, Amphliphi Biosciences, Integrated Biotherapeutics; C3J, Armata, Valanbio; Akagera, Aridis, Roche, Astra Zeneca: Advisor/Consultant|Genentech, Regeneron, Deep Blue, Basilea, Janssen;: Grant/Research Support|Infectious Diseases Society of America: Honoraria|MedImmune, Allergan, Pfizer, Advanced Liquid Logics, Theravance, Novartis, Merck; Medical Biosurfaces; Locus; Affinergy; Contrafect; Karius;: Grant/Research Support|Novartis, Debiopharm, Genentech, Achaogen, Affinium, Medicines Co., MedImmune, Bayer, Basilea, Affinergy, Janssen, Contrafect, Regeneron, Destiny,: Advisor/Consultant|Sepsis diagnostic: Patent pending|UpToDate: Royalties|Valanbio and ArcBio: Stock Options Oxford University Press 2023-11-27 /pmc/articles/PMC10678258/ http://dx.doi.org/10.1093/ofid/ofad500.379 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Infectious Diseases Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Abstract
Tao, Yazhong
Hung, Frances
Jogodnik, Matthew
Fu, Dezhao
Kair, Jackson L
Dykxhoorn, Derek M
Ruffin, Felicia
Scott, William K
Chan, Cliburn
Fowler, Vance G
Jackson, Annette M
307. Exploring HLA genotypes as contributing risk factors in Staphylococcus aureus bacteremia
title 307. Exploring HLA genotypes as contributing risk factors in Staphylococcus aureus bacteremia
title_full 307. Exploring HLA genotypes as contributing risk factors in Staphylococcus aureus bacteremia
title_fullStr 307. Exploring HLA genotypes as contributing risk factors in Staphylococcus aureus bacteremia
title_full_unstemmed 307. Exploring HLA genotypes as contributing risk factors in Staphylococcus aureus bacteremia
title_short 307. Exploring HLA genotypes as contributing risk factors in Staphylococcus aureus bacteremia
title_sort 307. exploring hla genotypes as contributing risk factors in staphylococcus aureus bacteremia
topic Abstract
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10678258/
http://dx.doi.org/10.1093/ofid/ofad500.379
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