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2187. Earliest Description of Mobile Genetic Elements (MGEs) Involved in Establishing bla(NDM) Persistence Following its Spread From Acinetobacter spp. to Enterobacterales

BACKGROUND: bla (NDM) is the most prevalent carbapenemase worldwide. It originated in Acinetobacter spp. and spread to Enterobacterales on MGEs despite bottlenecks in MGE transfers between, and persistence within, these phylogenetically distinct bacteria. To elucidate how this transfer and successfu...

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Autores principales: Touati, Dalila, Grenier, Frédéric, Lévesque, Simon, Rodrigue, Sebastien, Haraoui, Louis-Patrick
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10678332/
http://dx.doi.org/10.1093/ofid/ofad500.1809
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author Touati, Dalila
Grenier, Frédéric
Lévesque, Simon
Rodrigue, Sebastien
Haraoui, Louis-Patrick
author_facet Touati, Dalila
Grenier, Frédéric
Lévesque, Simon
Rodrigue, Sebastien
Haraoui, Louis-Patrick
author_sort Touati, Dalila
collection PubMed
description BACKGROUND: bla (NDM) is the most prevalent carbapenemase worldwide. It originated in Acinetobacter spp. and spread to Enterobacterales on MGEs despite bottlenecks in MGE transfers between, and persistence within, these phylogenetically distinct bacteria. To elucidate how this transfer and successful expansion were achieved, we investigated MGEs among the earliest NDM-positive Gram-negative bacteria (GNB), isolated in India in 2007. METHODS: Thirteen polymerase chain reaction-confirmed NDM-positive GNB underwent whole-genome sequencing (Illumina NovaSeq and Oxford Nanopore Technologies MinION) and computational analyses: assembly (Unicycler and Trycycler), annotation (RAST), identification (Kraken2), plasmid incompatibility (PlasmidFinder). RESULTS: Single copies of bla(NDM-1) were found in 12 Enterobacterales (6 K. pneumoniae; 3 E. coli; 2 E. cloacae; 1 E. hormaechei) and 1 A. baumannii (Ab), located on plasmids in 11/13 strains: 6 IncC, 3 IncFII, 2 IncFIB (Figure 1). Partial or complete ISAba125 was found upstream of all bla(NDM), with a second complete downstream copy forming Tn125 only in Ab. bla(NDM)'s genetic environment was highly diverse including the earliest evidence of its association with MGEs that participated in its global dissemination: insertion sequence common region 1 (ISCR1, n=5) and Tn3000 (n=4). IS3000, present in 2 copies bracketing Tn3000, was also found in single copies in 4 strains at varying distances upstream of bla(NDM). In 3/4 of these, ISCR1 was downstream of bla(NDM). These hybrid constructs may represent precursors leading to the formation of these MGEs, or degenerate structures. Figure 1: Genetic environment surrounding blaNDM in 13 Gram-negative bacteria isolated in India in 2007. [Figure: see text] Acibau: Acinetobacter baumannii; Entclo: Enterobacter cloacae; Enthor: Enterobacter hormaechei; Esccol: Escherichia coli; Klepne: Klebsiella pneumoniae. CONCLUSION: We present evidence of early, rapid and diverse adaptation of bla(NDM)’s genetic environment following its transfer from Acinetobacter spp. to Enterobacterales. We identify for the first time potentially intermediate genetic structures in the transition between the ancestral Tn125 structure from Acinetobacter spp., and both ISCR1 and Tn3000, which overtook Tn125 as the predominant MGEs among NDM-positive Enterobacterales. Additional sequencing of early NDM-positive isolates could shed more light on the genetic events leading to the formation of MGEs associated with bla(NDM), furthering our understanding of the emergence of MGEs carrying antibiotic-resistance genes. DISCLOSURES: All Authors: No reported disclosures
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spelling pubmed-106783322023-11-27 2187. Earliest Description of Mobile Genetic Elements (MGEs) Involved in Establishing bla(NDM) Persistence Following its Spread From Acinetobacter spp. to Enterobacterales Touati, Dalila Grenier, Frédéric Lévesque, Simon Rodrigue, Sebastien Haraoui, Louis-Patrick Open Forum Infect Dis Abstract BACKGROUND: bla (NDM) is the most prevalent carbapenemase worldwide. It originated in Acinetobacter spp. and spread to Enterobacterales on MGEs despite bottlenecks in MGE transfers between, and persistence within, these phylogenetically distinct bacteria. To elucidate how this transfer and successful expansion were achieved, we investigated MGEs among the earliest NDM-positive Gram-negative bacteria (GNB), isolated in India in 2007. METHODS: Thirteen polymerase chain reaction-confirmed NDM-positive GNB underwent whole-genome sequencing (Illumina NovaSeq and Oxford Nanopore Technologies MinION) and computational analyses: assembly (Unicycler and Trycycler), annotation (RAST), identification (Kraken2), plasmid incompatibility (PlasmidFinder). RESULTS: Single copies of bla(NDM-1) were found in 12 Enterobacterales (6 K. pneumoniae; 3 E. coli; 2 E. cloacae; 1 E. hormaechei) and 1 A. baumannii (Ab), located on plasmids in 11/13 strains: 6 IncC, 3 IncFII, 2 IncFIB (Figure 1). Partial or complete ISAba125 was found upstream of all bla(NDM), with a second complete downstream copy forming Tn125 only in Ab. bla(NDM)'s genetic environment was highly diverse including the earliest evidence of its association with MGEs that participated in its global dissemination: insertion sequence common region 1 (ISCR1, n=5) and Tn3000 (n=4). IS3000, present in 2 copies bracketing Tn3000, was also found in single copies in 4 strains at varying distances upstream of bla(NDM). In 3/4 of these, ISCR1 was downstream of bla(NDM). These hybrid constructs may represent precursors leading to the formation of these MGEs, or degenerate structures. Figure 1: Genetic environment surrounding blaNDM in 13 Gram-negative bacteria isolated in India in 2007. [Figure: see text] Acibau: Acinetobacter baumannii; Entclo: Enterobacter cloacae; Enthor: Enterobacter hormaechei; Esccol: Escherichia coli; Klepne: Klebsiella pneumoniae. CONCLUSION: We present evidence of early, rapid and diverse adaptation of bla(NDM)’s genetic environment following its transfer from Acinetobacter spp. to Enterobacterales. We identify for the first time potentially intermediate genetic structures in the transition between the ancestral Tn125 structure from Acinetobacter spp., and both ISCR1 and Tn3000, which overtook Tn125 as the predominant MGEs among NDM-positive Enterobacterales. Additional sequencing of early NDM-positive isolates could shed more light on the genetic events leading to the formation of MGEs associated with bla(NDM), furthering our understanding of the emergence of MGEs carrying antibiotic-resistance genes. DISCLOSURES: All Authors: No reported disclosures Oxford University Press 2023-11-27 /pmc/articles/PMC10678332/ http://dx.doi.org/10.1093/ofid/ofad500.1809 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Infectious Diseases Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Abstract
Touati, Dalila
Grenier, Frédéric
Lévesque, Simon
Rodrigue, Sebastien
Haraoui, Louis-Patrick
2187. Earliest Description of Mobile Genetic Elements (MGEs) Involved in Establishing bla(NDM) Persistence Following its Spread From Acinetobacter spp. to Enterobacterales
title 2187. Earliest Description of Mobile Genetic Elements (MGEs) Involved in Establishing bla(NDM) Persistence Following its Spread From Acinetobacter spp. to Enterobacterales
title_full 2187. Earliest Description of Mobile Genetic Elements (MGEs) Involved in Establishing bla(NDM) Persistence Following its Spread From Acinetobacter spp. to Enterobacterales
title_fullStr 2187. Earliest Description of Mobile Genetic Elements (MGEs) Involved in Establishing bla(NDM) Persistence Following its Spread From Acinetobacter spp. to Enterobacterales
title_full_unstemmed 2187. Earliest Description of Mobile Genetic Elements (MGEs) Involved in Establishing bla(NDM) Persistence Following its Spread From Acinetobacter spp. to Enterobacterales
title_short 2187. Earliest Description of Mobile Genetic Elements (MGEs) Involved in Establishing bla(NDM) Persistence Following its Spread From Acinetobacter spp. to Enterobacterales
title_sort 2187. earliest description of mobile genetic elements (mges) involved in establishing bla(ndm) persistence following its spread from acinetobacter spp. to enterobacterales
topic Abstract
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10678332/
http://dx.doi.org/10.1093/ofid/ofad500.1809
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