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300. Disturbance of Gut Microbial Diversity in ICU Patients from Colombia is Driven by Multi-Drug Resistant Organisms (MDRO) Colonization

BACKGROUND: Gut microbiota plays a critical role in health, with essential functions in physiology, metabolism, immunity, regulation, and protection against pathogens. Critically-ill patients admitted on the ICU experience perturbation in the microbiota, with reduction in the phylogenetic diversity...

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Autores principales: Parada Torres, Alexandra, Castro, Betsy, Malavet, Thomas, Forero, Nicolas, Matiz, Juan, Rodriguez, Yordy, Zambrano, Luis, Melissa Ordoñez, Karen, Santamaria, Alejandra, Ospina, Fidel, Beltran, Jaime, Guevara, Fredy, Martinez, Juliana, Porras, Alexandra, Sarmiento, Paola, Aroca, Luisa, Mora, Alejandra, Arias, Cesar A, Paola Carvajal, Lina, Rincon, Sandra, Reyes, Jinnethe
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10678845/
http://dx.doi.org/10.1093/ofid/ofad500.372
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author Parada Torres, Alexandra
Castro, Betsy
Malavet, Thomas
Forero, Nicolas
Matiz, Juan
Rodriguez, Yordy
Zambrano, Luis
Melissa Ordoñez, Karen
Santamaria, Alejandra
Ospina, Fidel
Beltran, Jaime
Guevara, Fredy
Martinez, Juliana
Porras, Alexandra
Sarmiento, Paola
Aroca, Luisa
Mora, Alejandra
Arias, Cesar A
Paola Carvajal, Lina
Rincon, Sandra
Reyes, Jinnethe
author_facet Parada Torres, Alexandra
Castro, Betsy
Malavet, Thomas
Forero, Nicolas
Matiz, Juan
Rodriguez, Yordy
Zambrano, Luis
Melissa Ordoñez, Karen
Santamaria, Alejandra
Ospina, Fidel
Beltran, Jaime
Guevara, Fredy
Martinez, Juliana
Porras, Alexandra
Sarmiento, Paola
Aroca, Luisa
Mora, Alejandra
Arias, Cesar A
Paola Carvajal, Lina
Rincon, Sandra
Reyes, Jinnethe
author_sort Parada Torres, Alexandra
collection PubMed
description BACKGROUND: Gut microbiota plays a critical role in health, with essential functions in physiology, metabolism, immunity, regulation, and protection against pathogens. Critically-ill patients admitted on the ICU experience perturbation in the microbiota, with reduction in the phylogenetic diversity and composition. Here, we aimed to investigate the rectal microbiota in patients admitted on the ICU from Colombia, focused on MDRO colonization. METHODS: Microbiome analysis and microbiological screening for MDRO and WGS were performed in rectal swabs taken on admission day from 180 patients from 5 ICUs. Microbiome analysis was determined by 16S rRNA sequencing using Illumina Miseq platform. alpha-diversity metrics were calculated by Richness, Simpson, and Shannon indexes, and beta-diversity was determined using Similarity Percentages (SIMPER) analysis. Patients were grouped into 2 cohorts: MDRO-colonized and non-colonized. Clinical data was collected using REDCap. RESULTS: MDRO colonization was detected in 13 patients (7%), and Enterobacter cloacae complex was the most prevalent microorganism (38%), followed by K. pneumoniae (23%), and P. aeruginosa (15%). Of these MDRO, 23% and 15% harbored KPC-2 and KPC-3/OXA-9 combination, respectively. Prevotella and Bacteroides were the most abundant genus in the microbiota of all patients. Interestingly, microbiota of MDRO-colonized patients showed lower diversity (Shannon p:0.0025, Simpson p: 0.0031 and richness 0.012) and had less bacterial taxa than the observed in the non-colonized group (n=167), in which Bacteroides, Porphyromonas, Campylobacter, and Oscillospiraceae genus were exclusively detected. Moreover, Parabacteroides was a genus exclusively identified in the MDRO colonized group. Further, 14 genus including Oscillospiraceae, Lactobacillus, and Faecalibacterium related to beneficial functions were lower in abundance from MDRO-colonized patients, whereas some pathobionts were present in high abundance in this group. Most of patients were men (58%); median age was 59 y/o. Charlson comorbidity index 4 (IQR=1-6). CONCLUSION: Loss in microbial diversity, with low abundance of beneficial microorganisms were associated with MDRO gut colonization in ICU patients from Colombia. DISCLOSURES: Karen Melissa Ordoñez, n/a, Pfizer: Advisor/Consultant|Pfizer: Honoraria
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spelling pubmed-106788452023-11-27 300. Disturbance of Gut Microbial Diversity in ICU Patients from Colombia is Driven by Multi-Drug Resistant Organisms (MDRO) Colonization Parada Torres, Alexandra Castro, Betsy Malavet, Thomas Forero, Nicolas Matiz, Juan Rodriguez, Yordy Zambrano, Luis Melissa Ordoñez, Karen Santamaria, Alejandra Ospina, Fidel Beltran, Jaime Guevara, Fredy Martinez, Juliana Porras, Alexandra Sarmiento, Paola Aroca, Luisa Mora, Alejandra Arias, Cesar A Paola Carvajal, Lina Rincon, Sandra Reyes, Jinnethe Open Forum Infect Dis Abstract BACKGROUND: Gut microbiota plays a critical role in health, with essential functions in physiology, metabolism, immunity, regulation, and protection against pathogens. Critically-ill patients admitted on the ICU experience perturbation in the microbiota, with reduction in the phylogenetic diversity and composition. Here, we aimed to investigate the rectal microbiota in patients admitted on the ICU from Colombia, focused on MDRO colonization. METHODS: Microbiome analysis and microbiological screening for MDRO and WGS were performed in rectal swabs taken on admission day from 180 patients from 5 ICUs. Microbiome analysis was determined by 16S rRNA sequencing using Illumina Miseq platform. alpha-diversity metrics were calculated by Richness, Simpson, and Shannon indexes, and beta-diversity was determined using Similarity Percentages (SIMPER) analysis. Patients were grouped into 2 cohorts: MDRO-colonized and non-colonized. Clinical data was collected using REDCap. RESULTS: MDRO colonization was detected in 13 patients (7%), and Enterobacter cloacae complex was the most prevalent microorganism (38%), followed by K. pneumoniae (23%), and P. aeruginosa (15%). Of these MDRO, 23% and 15% harbored KPC-2 and KPC-3/OXA-9 combination, respectively. Prevotella and Bacteroides were the most abundant genus in the microbiota of all patients. Interestingly, microbiota of MDRO-colonized patients showed lower diversity (Shannon p:0.0025, Simpson p: 0.0031 and richness 0.012) and had less bacterial taxa than the observed in the non-colonized group (n=167), in which Bacteroides, Porphyromonas, Campylobacter, and Oscillospiraceae genus were exclusively detected. Moreover, Parabacteroides was a genus exclusively identified in the MDRO colonized group. Further, 14 genus including Oscillospiraceae, Lactobacillus, and Faecalibacterium related to beneficial functions were lower in abundance from MDRO-colonized patients, whereas some pathobionts were present in high abundance in this group. Most of patients were men (58%); median age was 59 y/o. Charlson comorbidity index 4 (IQR=1-6). CONCLUSION: Loss in microbial diversity, with low abundance of beneficial microorganisms were associated with MDRO gut colonization in ICU patients from Colombia. DISCLOSURES: Karen Melissa Ordoñez, n/a, Pfizer: Advisor/Consultant|Pfizer: Honoraria Oxford University Press 2023-11-27 /pmc/articles/PMC10678845/ http://dx.doi.org/10.1093/ofid/ofad500.372 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Infectious Diseases Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Abstract
Parada Torres, Alexandra
Castro, Betsy
Malavet, Thomas
Forero, Nicolas
Matiz, Juan
Rodriguez, Yordy
Zambrano, Luis
Melissa Ordoñez, Karen
Santamaria, Alejandra
Ospina, Fidel
Beltran, Jaime
Guevara, Fredy
Martinez, Juliana
Porras, Alexandra
Sarmiento, Paola
Aroca, Luisa
Mora, Alejandra
Arias, Cesar A
Paola Carvajal, Lina
Rincon, Sandra
Reyes, Jinnethe
300. Disturbance of Gut Microbial Diversity in ICU Patients from Colombia is Driven by Multi-Drug Resistant Organisms (MDRO) Colonization
title 300. Disturbance of Gut Microbial Diversity in ICU Patients from Colombia is Driven by Multi-Drug Resistant Organisms (MDRO) Colonization
title_full 300. Disturbance of Gut Microbial Diversity in ICU Patients from Colombia is Driven by Multi-Drug Resistant Organisms (MDRO) Colonization
title_fullStr 300. Disturbance of Gut Microbial Diversity in ICU Patients from Colombia is Driven by Multi-Drug Resistant Organisms (MDRO) Colonization
title_full_unstemmed 300. Disturbance of Gut Microbial Diversity in ICU Patients from Colombia is Driven by Multi-Drug Resistant Organisms (MDRO) Colonization
title_short 300. Disturbance of Gut Microbial Diversity in ICU Patients from Colombia is Driven by Multi-Drug Resistant Organisms (MDRO) Colonization
title_sort 300. disturbance of gut microbial diversity in icu patients from colombia is driven by multi-drug resistant organisms (mdro) colonization
topic Abstract
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10678845/
http://dx.doi.org/10.1093/ofid/ofad500.372
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