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2468. The Genomic Epidemiology of Carbapenemase-Producing Enterobacterales (CPE) in Ontario, Canada, 2016
BACKGROUND: Carbapenemase-producing Enterobacterales (CPE) are among the most urgent of antimicrobial resistance threats. In south-central Ontario, Canada, over one-third of CPE cases are associated with local healthcare and the incidence of such CPE cases is rising steadily. We integrated whole-gen...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10679168/ http://dx.doi.org/10.1093/ofid/ofad500.2086 |
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author | Jamal, Alainna J Tijet, Nathalie McGeer, Allison Baqi, Mahin Borgia, Sergio Ciccotelli, William Farshait, Nataly Katz, Kevin Mehta, Mamta Goneau, Lee Mertz, Dominik Small, Lorne N Melano, Roberto |
author_facet | Jamal, Alainna J Tijet, Nathalie McGeer, Allison Baqi, Mahin Borgia, Sergio Ciccotelli, William Farshait, Nataly Katz, Kevin Mehta, Mamta Goneau, Lee Mertz, Dominik Small, Lorne N Melano, Roberto |
author_sort | Jamal, Alainna J |
collection | PubMed |
description | BACKGROUND: Carbapenemase-producing Enterobacterales (CPE) are among the most urgent of antimicrobial resistance threats. In south-central Ontario, Canada, over one-third of CPE cases are associated with local healthcare and the incidence of such CPE cases is rising steadily. We integrated whole-genome sequencing (WGS) and CPE population-based surveillance data to gain insights into CPE transmission dynamics in Ontario, Canada. [Figure: see text] METHODS: We included all incident CPE isolates received at the Public Health Ontario Laboratory as part of a voluntary surveillance program from Jan. 1 to Dec. 31, 2016 in Ontario, Canada (population ∼13.5 million). All isolates underwent Illumina WGS. MLST was determined for all isolates, and single nucleotide variant (SNV) analysis was performed by species. SNV analyses were combined with epidemiological data from the Toronto Invasive Bacterial Diseases Network to identify transmission clusters. RESULTS: There were 206 incident CPE isolates from 176 patients. Most common species were Escherichia coli (95, 46%) and Klebsiella pneumoniae (76, 37%), and most common carbapenemases produced were NDM (77, 37%), OXA-48-like (68, 33%), and KPC (45, 22%). There was variability in MLST, with ST167 being most common among E. coli (10, 11%), and ST147 being most common among K. pneumoniae (13, 17%). There were 14 clusters with 34 (17%) CPE isolates belonging to 33 (20%) unique patients total (Table). Cluster size range was 2-5 patients. Time from first to last identified case in clusters ranged from 0 to 258 days. In 8 clusters, the index case likely acquired CPE during prior hospitalization abroad, with subsequent direct or indirect transmission to other patients in the cluster. In 5 clusters, all patients likely acquired CPE at the Ontario hospital where their CPE was detected. CONCLUSION: There was variability in CPE species and MLST as well as carbapenemase produced. Almost one fifth of patients belonged to a transmission cluster, with transmission lasting many months in some clusters. These data highlight challenges with CPE local transmission and a need to intensify control measures. DISCLOSURES: All Authors: No reported disclosures |
format | Online Article Text |
id | pubmed-10679168 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-106791682023-11-27 2468. The Genomic Epidemiology of Carbapenemase-Producing Enterobacterales (CPE) in Ontario, Canada, 2016 Jamal, Alainna J Tijet, Nathalie McGeer, Allison Baqi, Mahin Borgia, Sergio Ciccotelli, William Farshait, Nataly Katz, Kevin Mehta, Mamta Goneau, Lee Mertz, Dominik Small, Lorne N Melano, Roberto Open Forum Infect Dis Abstract BACKGROUND: Carbapenemase-producing Enterobacterales (CPE) are among the most urgent of antimicrobial resistance threats. In south-central Ontario, Canada, over one-third of CPE cases are associated with local healthcare and the incidence of such CPE cases is rising steadily. We integrated whole-genome sequencing (WGS) and CPE population-based surveillance data to gain insights into CPE transmission dynamics in Ontario, Canada. [Figure: see text] METHODS: We included all incident CPE isolates received at the Public Health Ontario Laboratory as part of a voluntary surveillance program from Jan. 1 to Dec. 31, 2016 in Ontario, Canada (population ∼13.5 million). All isolates underwent Illumina WGS. MLST was determined for all isolates, and single nucleotide variant (SNV) analysis was performed by species. SNV analyses were combined with epidemiological data from the Toronto Invasive Bacterial Diseases Network to identify transmission clusters. RESULTS: There were 206 incident CPE isolates from 176 patients. Most common species were Escherichia coli (95, 46%) and Klebsiella pneumoniae (76, 37%), and most common carbapenemases produced were NDM (77, 37%), OXA-48-like (68, 33%), and KPC (45, 22%). There was variability in MLST, with ST167 being most common among E. coli (10, 11%), and ST147 being most common among K. pneumoniae (13, 17%). There were 14 clusters with 34 (17%) CPE isolates belonging to 33 (20%) unique patients total (Table). Cluster size range was 2-5 patients. Time from first to last identified case in clusters ranged from 0 to 258 days. In 8 clusters, the index case likely acquired CPE during prior hospitalization abroad, with subsequent direct or indirect transmission to other patients in the cluster. In 5 clusters, all patients likely acquired CPE at the Ontario hospital where their CPE was detected. CONCLUSION: There was variability in CPE species and MLST as well as carbapenemase produced. Almost one fifth of patients belonged to a transmission cluster, with transmission lasting many months in some clusters. These data highlight challenges with CPE local transmission and a need to intensify control measures. DISCLOSURES: All Authors: No reported disclosures Oxford University Press 2023-11-27 /pmc/articles/PMC10679168/ http://dx.doi.org/10.1093/ofid/ofad500.2086 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Infectious Diseases Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Abstract Jamal, Alainna J Tijet, Nathalie McGeer, Allison Baqi, Mahin Borgia, Sergio Ciccotelli, William Farshait, Nataly Katz, Kevin Mehta, Mamta Goneau, Lee Mertz, Dominik Small, Lorne N Melano, Roberto 2468. The Genomic Epidemiology of Carbapenemase-Producing Enterobacterales (CPE) in Ontario, Canada, 2016 |
title | 2468. The Genomic Epidemiology of Carbapenemase-Producing Enterobacterales (CPE) in Ontario, Canada, 2016 |
title_full | 2468. The Genomic Epidemiology of Carbapenemase-Producing Enterobacterales (CPE) in Ontario, Canada, 2016 |
title_fullStr | 2468. The Genomic Epidemiology of Carbapenemase-Producing Enterobacterales (CPE) in Ontario, Canada, 2016 |
title_full_unstemmed | 2468. The Genomic Epidemiology of Carbapenemase-Producing Enterobacterales (CPE) in Ontario, Canada, 2016 |
title_short | 2468. The Genomic Epidemiology of Carbapenemase-Producing Enterobacterales (CPE) in Ontario, Canada, 2016 |
title_sort | 2468. the genomic epidemiology of carbapenemase-producing enterobacterales (cpe) in ontario, canada, 2016 |
topic | Abstract |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10679168/ http://dx.doi.org/10.1093/ofid/ofad500.2086 |
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