Cargando…

587. Research and Development of Image Recognition AI to Estimate Bacterial Species using Gram Stain Findings in Aerobic and Anaerobic Blood Culture Bottle

BACKGROUND: Background In the highly fatal infectious disease of bacteremia, the ability to select antimicrobial agents at an earlier time is critical not only for early patient recovery, but also for reducing the development of resistant organisms. Gram staining of blood cultures is a useful test f...

Descripción completa

Detalles Bibliográficos
Autores principales: Miyatsuka, Isao, Yamamoto, Kei, Ohji, Goh, Ohmagari, Norio, Kurokawa, Masami, Ebisawa, Kei Furui, Ohnuma, Kenichiro, Kusuki, Mari, Nakada, Mitsutaka, Maeta, Shogo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10679426/
http://dx.doi.org/10.1093/ofid/ofad500.656
_version_ 1785150586994294784
author Miyatsuka, Isao
Yamamoto, Kei
Ohji, Goh
Ohmagari, Norio
Kurokawa, Masami
Ebisawa, Kei Furui
Ohnuma, Kenichiro
Kusuki, Mari
Nakada, Mitsutaka
Maeta, Shogo
author_facet Miyatsuka, Isao
Yamamoto, Kei
Ohji, Goh
Ohmagari, Norio
Kurokawa, Masami
Ebisawa, Kei Furui
Ohnuma, Kenichiro
Kusuki, Mari
Nakada, Mitsutaka
Maeta, Shogo
author_sort Miyatsuka, Isao
collection PubMed
description BACKGROUND: Background In the highly fatal infectious disease of bacteremia, the ability to select antimicrobial agents at an earlier time is critical not only for early patient recovery, but also for reducing the development of resistant organisms. Gram staining of blood cultures is a useful test for early selection of antimicrobial agents, but it requires some skill in deciphering. Therefore, we developed an image analysis system for Gram stain images of blood cultures and have verified whether it is possible to estimate the bacterial species to facilitate the initial selection of antimicrobial agents, regardless of the level of proficiency. METHODS: Method Slides and bacterial species-identification information from an anonymized Gram stain registry at two medical institutions, National Center for Global health and Medicine (NCGM) and Kobe University Hospital (KUH), were used for the study. 1113 cases of aerobic bottles and 1060 cases of anaerobic bottles were included. Mock-specimens were used for the rare bacteria. A total of 23,947 images were generated by capturing the observation field of view of an optical microscope with a smartphone. Table 1 shows the bacterial classification of aerobic bottles and Table 2 shows the bacterial classification of anaerobic bottles. The data were divided into training data and test data at a ratio of 8 to 2 for each category. [Figure: see text] [Figure: see text] RESULTS: The macro-average recall (sensitivity) and accuracy of the test data were 64% and 82% for aerobic bottles and 68% and 86% for anaerobic bottles, respectively. The results showed the possibility of classifying the performing bacterial species with an accuracy of over 70% using only Gram stained images via image recognition AI. For aerobic bottles in particular, the seven categories of GNR, GNC, GPR, GPC, yeast, No organism, and multiple bacteria are predicted to have 97% accuracy, and 90% macro average recall. CONCLUSION: The research has shown that it is possible to classify bacterial species to a certain extent only by observing the Gram stain images. Our goal is to narrow down and focus more on the clinically-meaningful bacterial species, and to improve the accuracy of our classification. Also, we are planning to make comparisons with specialists in the future. DISCLOSURES: Kei Yamamoto, MD, Canon medical systems: Grant/Research Support|CarbGeM: Grant/Research Support|CarbGeM: 7090302|Fujirebio: Grant/Research Support|Sanyo Chemical Industries: Grant/Research Support|VisGene: Grant/Research Support Goh Ohji, MD, PhD, DTMH, CarbGeM: Advisor/Consultant
format Online
Article
Text
id pubmed-10679426
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-106794262023-11-27 587. Research and Development of Image Recognition AI to Estimate Bacterial Species using Gram Stain Findings in Aerobic and Anaerobic Blood Culture Bottle Miyatsuka, Isao Yamamoto, Kei Ohji, Goh Ohmagari, Norio Kurokawa, Masami Ebisawa, Kei Furui Ohnuma, Kenichiro Kusuki, Mari Nakada, Mitsutaka Maeta, Shogo Open Forum Infect Dis Abstract BACKGROUND: Background In the highly fatal infectious disease of bacteremia, the ability to select antimicrobial agents at an earlier time is critical not only for early patient recovery, but also for reducing the development of resistant organisms. Gram staining of blood cultures is a useful test for early selection of antimicrobial agents, but it requires some skill in deciphering. Therefore, we developed an image analysis system for Gram stain images of blood cultures and have verified whether it is possible to estimate the bacterial species to facilitate the initial selection of antimicrobial agents, regardless of the level of proficiency. METHODS: Method Slides and bacterial species-identification information from an anonymized Gram stain registry at two medical institutions, National Center for Global health and Medicine (NCGM) and Kobe University Hospital (KUH), were used for the study. 1113 cases of aerobic bottles and 1060 cases of anaerobic bottles were included. Mock-specimens were used for the rare bacteria. A total of 23,947 images were generated by capturing the observation field of view of an optical microscope with a smartphone. Table 1 shows the bacterial classification of aerobic bottles and Table 2 shows the bacterial classification of anaerobic bottles. The data were divided into training data and test data at a ratio of 8 to 2 for each category. [Figure: see text] [Figure: see text] RESULTS: The macro-average recall (sensitivity) and accuracy of the test data were 64% and 82% for aerobic bottles and 68% and 86% for anaerobic bottles, respectively. The results showed the possibility of classifying the performing bacterial species with an accuracy of over 70% using only Gram stained images via image recognition AI. For aerobic bottles in particular, the seven categories of GNR, GNC, GPR, GPC, yeast, No organism, and multiple bacteria are predicted to have 97% accuracy, and 90% macro average recall. CONCLUSION: The research has shown that it is possible to classify bacterial species to a certain extent only by observing the Gram stain images. Our goal is to narrow down and focus more on the clinically-meaningful bacterial species, and to improve the accuracy of our classification. Also, we are planning to make comparisons with specialists in the future. DISCLOSURES: Kei Yamamoto, MD, Canon medical systems: Grant/Research Support|CarbGeM: Grant/Research Support|CarbGeM: 7090302|Fujirebio: Grant/Research Support|Sanyo Chemical Industries: Grant/Research Support|VisGene: Grant/Research Support Goh Ohji, MD, PhD, DTMH, CarbGeM: Advisor/Consultant Oxford University Press 2023-11-27 /pmc/articles/PMC10679426/ http://dx.doi.org/10.1093/ofid/ofad500.656 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Infectious Diseases Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Abstract
Miyatsuka, Isao
Yamamoto, Kei
Ohji, Goh
Ohmagari, Norio
Kurokawa, Masami
Ebisawa, Kei Furui
Ohnuma, Kenichiro
Kusuki, Mari
Nakada, Mitsutaka
Maeta, Shogo
587. Research and Development of Image Recognition AI to Estimate Bacterial Species using Gram Stain Findings in Aerobic and Anaerobic Blood Culture Bottle
title 587. Research and Development of Image Recognition AI to Estimate Bacterial Species using Gram Stain Findings in Aerobic and Anaerobic Blood Culture Bottle
title_full 587. Research and Development of Image Recognition AI to Estimate Bacterial Species using Gram Stain Findings in Aerobic and Anaerobic Blood Culture Bottle
title_fullStr 587. Research and Development of Image Recognition AI to Estimate Bacterial Species using Gram Stain Findings in Aerobic and Anaerobic Blood Culture Bottle
title_full_unstemmed 587. Research and Development of Image Recognition AI to Estimate Bacterial Species using Gram Stain Findings in Aerobic and Anaerobic Blood Culture Bottle
title_short 587. Research and Development of Image Recognition AI to Estimate Bacterial Species using Gram Stain Findings in Aerobic and Anaerobic Blood Culture Bottle
title_sort 587. research and development of image recognition ai to estimate bacterial species using gram stain findings in aerobic and anaerobic blood culture bottle
topic Abstract
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10679426/
http://dx.doi.org/10.1093/ofid/ofad500.656
work_keys_str_mv AT miyatsukaisao 587researchanddevelopmentofimagerecognitionaitoestimatebacterialspeciesusinggramstainfindingsinaerobicandanaerobicbloodculturebottle
AT yamamotokei 587researchanddevelopmentofimagerecognitionaitoestimatebacterialspeciesusinggramstainfindingsinaerobicandanaerobicbloodculturebottle
AT ohjigoh 587researchanddevelopmentofimagerecognitionaitoestimatebacterialspeciesusinggramstainfindingsinaerobicandanaerobicbloodculturebottle
AT ohmagarinorio 587researchanddevelopmentofimagerecognitionaitoestimatebacterialspeciesusinggramstainfindingsinaerobicandanaerobicbloodculturebottle
AT kurokawamasami 587researchanddevelopmentofimagerecognitionaitoestimatebacterialspeciesusinggramstainfindingsinaerobicandanaerobicbloodculturebottle
AT ebisawakeifurui 587researchanddevelopmentofimagerecognitionaitoestimatebacterialspeciesusinggramstainfindingsinaerobicandanaerobicbloodculturebottle
AT ohnumakenichiro 587researchanddevelopmentofimagerecognitionaitoestimatebacterialspeciesusinggramstainfindingsinaerobicandanaerobicbloodculturebottle
AT kusukimari 587researchanddevelopmentofimagerecognitionaitoestimatebacterialspeciesusinggramstainfindingsinaerobicandanaerobicbloodculturebottle
AT nakadamitsutaka 587researchanddevelopmentofimagerecognitionaitoestimatebacterialspeciesusinggramstainfindingsinaerobicandanaerobicbloodculturebottle
AT maetashogo 587researchanddevelopmentofimagerecognitionaitoestimatebacterialspeciesusinggramstainfindingsinaerobicandanaerobicbloodculturebottle