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Identification of lactylation gene CALML5 and its correlated lncRNAs in cutaneous melanoma by machine learning

As a product of glycolysis, lactate contributes to cancer proliferation, immunosuppression, and metastasis via histone lactylation. However, the relationship between cutaneous melanoma (CM) and lactylation-associated genes and lncRNAs has remained unclear. In this study, 4 mechanism learning algorit...

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Detalles Bibliográficos
Autores principales: Feng, Hailiang, Chen, Wei, Zhang, Chen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Lippincott Williams & Wilkins 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10681499/
https://www.ncbi.nlm.nih.gov/pubmed/38013352
http://dx.doi.org/10.1097/MD.0000000000035999
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author Feng, Hailiang
Chen, Wei
Zhang, Chen
author_facet Feng, Hailiang
Chen, Wei
Zhang, Chen
author_sort Feng, Hailiang
collection PubMed
description As a product of glycolysis, lactate contributes to cancer proliferation, immunosuppression, and metastasis via histone lactylation. However, the relationship between cutaneous melanoma (CM) and lactylation-associated genes and lncRNAs has remained unclear. In this study, 4 mechanism learning algorithms and integrated bioinformatic analyses were employed to identify the core lactylation-associated genes and lncRNAs. Subsequently, 2 risk signatures based on the hub lactylation-associated genes and lncRNAs were constructed for CM patients. As a result, CALML5 was identified as a core lactylation-associated gene in CM, and its expression was found to be associated with patients survival and immune infiltration, suggesting its relevance as a potential therapeutic target. Additionally, this study provided clarification on hub CALML5-associated lncRNAs in CM, offering insights into their roles in the disease. Meanwhile, 2 identified risk signatures were both strongly linked to the prognosis and cancer growth of CM, underscoring their potential as valuable prognostic indicators. Furthermore, mechanistic analyses suggested a significant association between the risk signature and the immune microenvironment in CM, highlighting potential immune-related implications in disease progression. In conclusion, we propose that lactylation-associated genes and lncRNAs hold promise as potential targets in CM. Moreover, our findings revealed a significant correlation between lactylation and the immune microenvironment, providing crucial insights for guiding individualized treatment strategies in CM.
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spelling pubmed-106814992023-11-24 Identification of lactylation gene CALML5 and its correlated lncRNAs in cutaneous melanoma by machine learning Feng, Hailiang Chen, Wei Zhang, Chen Medicine (Baltimore) 5700 As a product of glycolysis, lactate contributes to cancer proliferation, immunosuppression, and metastasis via histone lactylation. However, the relationship between cutaneous melanoma (CM) and lactylation-associated genes and lncRNAs has remained unclear. In this study, 4 mechanism learning algorithms and integrated bioinformatic analyses were employed to identify the core lactylation-associated genes and lncRNAs. Subsequently, 2 risk signatures based on the hub lactylation-associated genes and lncRNAs were constructed for CM patients. As a result, CALML5 was identified as a core lactylation-associated gene in CM, and its expression was found to be associated with patients survival and immune infiltration, suggesting its relevance as a potential therapeutic target. Additionally, this study provided clarification on hub CALML5-associated lncRNAs in CM, offering insights into their roles in the disease. Meanwhile, 2 identified risk signatures were both strongly linked to the prognosis and cancer growth of CM, underscoring their potential as valuable prognostic indicators. Furthermore, mechanistic analyses suggested a significant association between the risk signature and the immune microenvironment in CM, highlighting potential immune-related implications in disease progression. In conclusion, we propose that lactylation-associated genes and lncRNAs hold promise as potential targets in CM. Moreover, our findings revealed a significant correlation between lactylation and the immune microenvironment, providing crucial insights for guiding individualized treatment strategies in CM. Lippincott Williams & Wilkins 2023-11-24 /pmc/articles/PMC10681499/ /pubmed/38013352 http://dx.doi.org/10.1097/MD.0000000000035999 Text en Copyright © 2023 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License 4.0 (CCBY) (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle 5700
Feng, Hailiang
Chen, Wei
Zhang, Chen
Identification of lactylation gene CALML5 and its correlated lncRNAs in cutaneous melanoma by machine learning
title Identification of lactylation gene CALML5 and its correlated lncRNAs in cutaneous melanoma by machine learning
title_full Identification of lactylation gene CALML5 and its correlated lncRNAs in cutaneous melanoma by machine learning
title_fullStr Identification of lactylation gene CALML5 and its correlated lncRNAs in cutaneous melanoma by machine learning
title_full_unstemmed Identification of lactylation gene CALML5 and its correlated lncRNAs in cutaneous melanoma by machine learning
title_short Identification of lactylation gene CALML5 and its correlated lncRNAs in cutaneous melanoma by machine learning
title_sort identification of lactylation gene calml5 and its correlated lncrnas in cutaneous melanoma by machine learning
topic 5700
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10681499/
https://www.ncbi.nlm.nih.gov/pubmed/38013352
http://dx.doi.org/10.1097/MD.0000000000035999
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