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Identification of lactylation gene CALML5 and its correlated lncRNAs in cutaneous melanoma by machine learning
As a product of glycolysis, lactate contributes to cancer proliferation, immunosuppression, and metastasis via histone lactylation. However, the relationship between cutaneous melanoma (CM) and lactylation-associated genes and lncRNAs has remained unclear. In this study, 4 mechanism learning algorit...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Lippincott Williams & Wilkins
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10681499/ https://www.ncbi.nlm.nih.gov/pubmed/38013352 http://dx.doi.org/10.1097/MD.0000000000035999 |
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author | Feng, Hailiang Chen, Wei Zhang, Chen |
author_facet | Feng, Hailiang Chen, Wei Zhang, Chen |
author_sort | Feng, Hailiang |
collection | PubMed |
description | As a product of glycolysis, lactate contributes to cancer proliferation, immunosuppression, and metastasis via histone lactylation. However, the relationship between cutaneous melanoma (CM) and lactylation-associated genes and lncRNAs has remained unclear. In this study, 4 mechanism learning algorithms and integrated bioinformatic analyses were employed to identify the core lactylation-associated genes and lncRNAs. Subsequently, 2 risk signatures based on the hub lactylation-associated genes and lncRNAs were constructed for CM patients. As a result, CALML5 was identified as a core lactylation-associated gene in CM, and its expression was found to be associated with patients survival and immune infiltration, suggesting its relevance as a potential therapeutic target. Additionally, this study provided clarification on hub CALML5-associated lncRNAs in CM, offering insights into their roles in the disease. Meanwhile, 2 identified risk signatures were both strongly linked to the prognosis and cancer growth of CM, underscoring their potential as valuable prognostic indicators. Furthermore, mechanistic analyses suggested a significant association between the risk signature and the immune microenvironment in CM, highlighting potential immune-related implications in disease progression. In conclusion, we propose that lactylation-associated genes and lncRNAs hold promise as potential targets in CM. Moreover, our findings revealed a significant correlation between lactylation and the immune microenvironment, providing crucial insights for guiding individualized treatment strategies in CM. |
format | Online Article Text |
id | pubmed-10681499 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Lippincott Williams & Wilkins |
record_format | MEDLINE/PubMed |
spelling | pubmed-106814992023-11-24 Identification of lactylation gene CALML5 and its correlated lncRNAs in cutaneous melanoma by machine learning Feng, Hailiang Chen, Wei Zhang, Chen Medicine (Baltimore) 5700 As a product of glycolysis, lactate contributes to cancer proliferation, immunosuppression, and metastasis via histone lactylation. However, the relationship between cutaneous melanoma (CM) and lactylation-associated genes and lncRNAs has remained unclear. In this study, 4 mechanism learning algorithms and integrated bioinformatic analyses were employed to identify the core lactylation-associated genes and lncRNAs. Subsequently, 2 risk signatures based on the hub lactylation-associated genes and lncRNAs were constructed for CM patients. As a result, CALML5 was identified as a core lactylation-associated gene in CM, and its expression was found to be associated with patients survival and immune infiltration, suggesting its relevance as a potential therapeutic target. Additionally, this study provided clarification on hub CALML5-associated lncRNAs in CM, offering insights into their roles in the disease. Meanwhile, 2 identified risk signatures were both strongly linked to the prognosis and cancer growth of CM, underscoring their potential as valuable prognostic indicators. Furthermore, mechanistic analyses suggested a significant association between the risk signature and the immune microenvironment in CM, highlighting potential immune-related implications in disease progression. In conclusion, we propose that lactylation-associated genes and lncRNAs hold promise as potential targets in CM. Moreover, our findings revealed a significant correlation between lactylation and the immune microenvironment, providing crucial insights for guiding individualized treatment strategies in CM. Lippincott Williams & Wilkins 2023-11-24 /pmc/articles/PMC10681499/ /pubmed/38013352 http://dx.doi.org/10.1097/MD.0000000000035999 Text en Copyright © 2023 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License 4.0 (CCBY) (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | 5700 Feng, Hailiang Chen, Wei Zhang, Chen Identification of lactylation gene CALML5 and its correlated lncRNAs in cutaneous melanoma by machine learning |
title | Identification of lactylation gene CALML5 and its correlated lncRNAs in cutaneous melanoma by machine learning |
title_full | Identification of lactylation gene CALML5 and its correlated lncRNAs in cutaneous melanoma by machine learning |
title_fullStr | Identification of lactylation gene CALML5 and its correlated lncRNAs in cutaneous melanoma by machine learning |
title_full_unstemmed | Identification of lactylation gene CALML5 and its correlated lncRNAs in cutaneous melanoma by machine learning |
title_short | Identification of lactylation gene CALML5 and its correlated lncRNAs in cutaneous melanoma by machine learning |
title_sort | identification of lactylation gene calml5 and its correlated lncrnas in cutaneous melanoma by machine learning |
topic | 5700 |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10681499/ https://www.ncbi.nlm.nih.gov/pubmed/38013352 http://dx.doi.org/10.1097/MD.0000000000035999 |
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